A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus

Indocalamus tessellatus, a broad-leaved bamboo species, holds significant economic and ecological value. However, the absence of a high-quality reference genome has constrained genetic and functional studies of this species. Here, we report a chromosome-scale genome assembly of I. tessellatus, constructed by integrating PacBio HiFi and Hi-C sequencing technologies. The final assembly is 2.89 Gb with a scaffold N50 of 117.66 Mb. BUSCO assessment against the poales_odb10 dataset revealed 99.0% completeness, indicating the high quality of the assembly. Additionally, a total of 41,765 protein-coding genes were predicted, offering a critical resource for functional annotation and comparative genomics. This reference genome establishes a foundation for studies on I. tessellatus biology, breeding, and conservation.

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Journal
Scientific Data
Published
2025-10-28
DOI
https://doi.org/10.1038/s41597-025-05988-5
Primary Topic
Chromosomal and Genetic Variations
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article
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article

A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus

Xianjun Deng, Site Luo, Xianshixuan Liu, Cheng Zhou et al.
Scientific Data
Chromosomal and Genetic Variations
article

A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus

Xianjun Deng, Site Luo, Xianshixuan Liu, Cheng Zhou, Daomin Chen, Zhe Chen, Yikun Wang, Weicheng Zheng, Xiaoqing Hu, Qian Xu, Aiwu Jin, Yufang Wu, Qianggen Zhu, Xiaofang Yan, W Qiu
article en

Abstract

Indocalamus tessellatus, a broad-leaved bamboo species, holds significant economic and ecological value. However, the absence of a high-quality reference genome has constrained genetic and functional studies of this species. Here, we report a chromosome-scale genome assembly of I. tessellatus, constructed by integrating PacBio HiFi and Hi-C sequencing technologies. The final assembly is 2.89 Gb with a scaffold N50 of 117.66 Mb. BUSCO assessment against the poales_odb10 dataset revealed 99.0% completeness, indicating the high quality of the assembly. Additionally, a total of 41,765 protein-coding genes were predicted, offering a critical resource for functional annotation and comparative genomics. This reference genome establishes a foundation for studies on I. tessellatus biology, breeding, and conservation.

Scientific DataVol. 12(1)
Xiamen University (CN), Lishui University (CN), Lishui Academy of Forestry (CN)
Openalex Percentile: Top 77%
Chromosomal and Genetic Variations
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A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus — Xianjun Deng, Site Luo, et al. · Scientific Data (2025) | TGRS Research Map | TGRS