Cryo-EM reveals open and closed Asgard chromatin assemblies

Asgards are the closest archaeal relatives of eukaryotes, representing an important step in chromatin evolution. However, their chromatin organization has remained enigmatic until now. In this study, we present the first structures of Asgard chromatin assemblies formed by the Hodarchaeal histone HHoB. Our high-resolution cryo-electron microscopy (cryo-EM) structures reveal that this Asgard histone assembles into compact "closed" and into extended "open" hypernucleosomes. Thus, the closed hypernucleosome conformation is conserved across archaeal lineages, while the open conformation resembles a eukaryotic H3-H4 octasome and likely represents an Asgard-specific innovation. Moreover, we show that Mg²⁺ ions influence Asgard chromatin conformation, suggesting a regulatory role. Overall, our study provides the first structure-based model of Asgard chromatin organization, expanding our understanding of chromatin architecture in an evolutionary context.

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Publication Details

Journal
Molecular Cell
Published
2025-10-28
DOI
https://doi.org/10.1016/j.molcel.2025.10.001
Citations
7
Primary Topic
Genomics and Chromatin Dynamics
Type
article
Field-Weighted Citation Impact
5.64
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article

Cryo-EM reveals open and closed Asgard chromatin assemblies

Harsh Ranawat, Svetlana Dodonova, Natalia Lopez‐Barbosa, Thomas Quail et al.
7 citations
Molecular Cell
Genomics and Chromatin Dynamics
5.64
article

Cryo-EM reveals open and closed Asgard chromatin assemblies

Harsh Ranawat, Svetlana Dodonova, Natalia Lopez‐Barbosa, Thomas Quail, Remus T. Dame, Marc K M Cajili
article en
7 citations

Abstract

Asgards are the closest archaeal relatives of eukaryotes, representing an important step in chromatin evolution. However, their chromatin organization has remained enigmatic until now. In this study, we present the first structures of Asgard chromatin assemblies formed by the Hodarchaeal histone HHoB. Our high-resolution cryo-electron microscopy (cryo-EM) structures reveal that this Asgard histone assembles into compact "closed" and into extended "open" hypernucleosomes. Thus, the closed hypernucleosome conformation is conserved across archaeal lineages, while the open conformation resembles a eukaryotic H3-H4 octasome and likely represents an Asgard-specific innovation. Moreover, we show that Mg²⁺ ions influence Asgard chromatin conformation, suggesting a regulatory role. Overall, our study provides the first structure-based model of Asgard chromatin organization, expanding our understanding of chromatin architecture in an evolutionary context.

Molecular CellVol. 85(22)
Leiden University (NL), European Bioinformatics Institute (GB), European Molecular Biology Organization (DE), Heidelberg University (DE), European Molecular Biology Laboratory (ES), European Molecular Biology Laboratory (DE)
Openalex Percentile: Top 4%
Genomics and Chromatin Dynamics
5.64
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Cryo-EM reveals open and closed Asgard chromatin assemblies — Harsh Ranawat, Svetlana Dodonova, et al. · Molecular Cell (2025) | TGRS Research Map | TGRS