The complete plastid genome of <i>Crepidium calophyllum</i> (Orchidaceae: Malaxidinae) and phylogenetic analysis

<i>Crepidium calophyllum</i> is a terrestrial orchid native to tropical forests in southern China and Southeast Asia. Once classified under <i>Malaxis</i>, it has since been reassigned to <i>Crepidium</i>. This study presents the first complete plastid genome (plastome) of <i>C. calophyllum</i>, which is 158,884 bp in length. Its gene content and order are highly conserved compared to other autotrophic species within Malaxidinae. Phylogenomic analyses using both maximum likelihood and Bayesian inference, based on complete plastomes, place <i>C. calophyllum</i> within <i>Crepidium</i>, as sister to <i>Dienia</i>. Interestingly, these analyses also reveal the polyphyly of <i>Malaxis</i> and <i>Liparis</i>, suggesting unresolved taxonomic issues within Malaxidinae.

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Journal
Mitochondrial DNA Part B
Published
2025-10-28
DOI
https://doi.org/10.1080/23802359.2025.2579078
Primary Topic
Biological and pharmacological studies of plants
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article
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article

The complete plastid genome of Crepidium calophyllum (Orchidaceae: Malaxidinae) and phylogenetic analysis

Baiyin Yu, Ran Yu, Shengxin Chang, Kwo-Ching Huang et al.
Mitochondrial DNA Part B
Biological and pharmacological studies of plants
article

The complete plastid genome of Crepidium calophyllum (Orchidaceae: Malaxidinae) and phylogenetic analysis

Baiyin Yu, Ran Yu, Shengxin Chang, Kwo-Ching Huang, Chunxia Li, Ling Lu, Wei Han
article en

Abstract

<i>Crepidium calophyllum</i> is a terrestrial orchid native to tropical forests in southern China and Southeast Asia. Once classified under <i>Malaxis</i>, it has since been reassigned to <i>Crepidium</i>. This study presents the first complete plastid genome (plastome) of <i>C. calophyllum</i>, which is 158,884 bp in length. Its gene content and order are highly conserved compared to other autotrophic species within Malaxidinae. Phylogenomic analyses using both maximum likelihood and Bayesian inference, based on complete plastomes, place <i>C. calophyllum</i> within <i>Crepidium</i>, as sister to <i>Dienia</i>. Interestingly, these analyses also reveal the polyphyly of <i>Malaxis</i> and <i>Liparis</i>, suggesting unresolved taxonomic issues within Malaxidinae.

Mitochondrial DNA Part BVol. 10(12)
Shaoguan University (CN), Guangdong Food and Drug Vocational College (CN)
Openalex Percentile: Top 65%
Biological and pharmacological studies of plants
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The complete plastid genome of <i>Crepidium calophyllum</i> (Orchidaceae: Malaxidinae) and phylogenetic analysis — Baiyin Yu, Ran Yu, et al. · Mitochondrial DNA Part B (2025) | TGRS Research Map | TGRS