Universal center-of-mass scaling shapes segment fluctuations and chromatin dynamics

We show that cancellation of internal forces together with spatially uncorrelated noise generically enforces a universal <a:math xmlns:a="http://www.w3.org/1998/Math/MathML"> <a:mrow> <a:mn>1</a:mn> <a:mo>/</a:mo> <a:mi>s</a:mi> </a:mrow> </a:math> scaling of the center-of-mass (COM) diffusivity for polymer segments of contour length <b:math xmlns:b="http://www.w3.org/1998/Math/MathML"> <b:mi>s</b:mi> </b:math> , independent of model details. Within an active generalized Rouse-Langevin (A-GRLE) framework for fractal polymers in a viscoelastic bath with weak activity, we derive closed-form links between segment COM motion and the short-time behavior of two-point fluctuations. The same COM law predicts transient <c:math xmlns:c="http://www.w3.org/1998/Math/MathML"> <c:msup> <c:mi>s</c:mi> <c:mrow> <c:mo>−</c:mo> <c:mn>3</c:mn> </c:mrow> </c:msup> </c:math> tangent-tangent correlations along the contour following a temperature quench. Reanalyzing recent two-locus chromatin tracking, we extract a dynamic COM exponent <d:math xmlns:d="http://www.w3.org/1998/Math/MathML"> <d:mrow> <d:mi>ξ</d:mi> <d:mo>=</d:mo> <d:mn>0.77</d:mn> <d:mo>±</d:mo> <d:mn>0.16</d:mn> </d:mrow> </d:math> , suggesting topological constraints. These results identify model-independent signatures of collective polymer dynamics and clarify that the observed Rouse-like scaling of chromatin loci reflects transient, unentangled dynamics with an inevitable crossover to an entangled regime at longer times.

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Journal
Physical Review Research
Published
2025-09-19
DOI
https://doi.org/10.1103/ms1q-z8zp
Primary Topic
Genomics and Chromatin Dynamics
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article
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article

Universal center-of-mass scaling shapes segment fluctuations and chromatin dynamics

Kirill Polovnikov, Mehran Kardar
Physical Review Research
Genomics and Chromatin Dynamics
article

Universal center-of-mass scaling shapes segment fluctuations and chromatin dynamics

Kirill Polovnikov, Mehran Kardar
article en

Abstract

We show that cancellation of internal forces together with spatially uncorrelated noise generically enforces a universal <a:math xmlns:a="http://www.w3.org/1998/Math/MathML"> <a:mrow> <a:mn>1</a:mn> <a:mo>/</a:mo> <a:mi>s</a:mi> </a:mrow> </a:math> scaling of the center-of-mass (COM) diffusivity for polymer segments of contour length <b:math xmlns:b="http://www.w3.org/1998/Math/MathML"> <b:mi>s</b:mi> </b:math> , independent of model details. Within an active generalized Rouse-Langevin (A-GRLE) framework for fractal polymers in a viscoelastic bath with weak activity, we derive closed-form links between segment COM motion and the short-time behavior of two-point fluctuations. The same COM law predicts transient <c:math xmlns:c="http://www.w3.org/1998/Math/MathML"> <c:msup> <c:mi>s</c:mi> <c:mrow> <c:mo>−</c:mo> <c:mn>3</c:mn> </c:mrow> </c:msup> </c:math> tangent-tangent correlations along the contour following a temperature quench. Reanalyzing recent two-locus chromatin tracking, we extract a dynamic COM exponent <d:math xmlns:d="http://www.w3.org/1998/Math/MathML"> <d:mrow> <d:mi>ξ</d:mi> <d:mo>=</d:mo> <d:mn>0.77</d:mn> <d:mo>±</d:mo> <d:mn>0.16</d:mn> </d:mrow> </d:math> , suggesting topological constraints. These results identify model-independent signatures of collective polymer dynamics and clarify that the observed Rouse-like scaling of chromatin loci reflects transient, unentangled dynamics with an inevitable crossover to an entangled regime at longer times.

Physical Review ResearchVol. 7(4)
Skolkovo Institute of Science and Technology (RU), University of Potsdam (DE), Massachusetts Institute of Technology (US)
Openalex Percentile: Top 72%
Genomics and Chromatin Dynamics
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Universal center-of-mass scaling shapes segment fluctuations and chromatin dynamics — Kirill Polovnikov, Mehran Kardar · Physical Review Research (2025) | TGRS Research Map | TGRS