GPU-Accelerated Graph-Based Semiempirical Quantum Chemistry

Graph-based electronic structure theory offers a scalable approach to study large, complex atomistic systems using distributed and hybrid computational platforms. We demonstrate the coupling of graph-based linear scaling electronic structure theory, as implemented in the Scalable Ecosystem, Driver, and Analyzer for Complex Chemistry Simulations (SEDACS), with semiempirical quantum chemistry methods as implemented in the PySEQM code, with Graphics Processing Unit (GPU) acceleration. This powerful combination enables efficient, scalable electronic structure calculations over many nodes, significantly reducing computational cost while naturally harnessing parallelism. Detailed analyses of parallelization efficiency, computational accuracy, and communication overheads are provided, highlighting an order-of-magnitude speedup for systems of up to 10,000 atoms.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-10-27
DOI
https://doi.org/10.1021/acs.jctc.5c00936
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
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article

GPU-Accelerated Graph-Based Semiempirical Quantum Chemistry

Nicholas Lubbers, Maksim Kulichenko, Robert V. Stanton, Sergei Tretiak et al.
Journal of Chemical Theory and Computation
Machine Learning in Materials Science
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GPU-Accelerated Graph-Based Semiempirical Quantum Chemistry

Nicholas Lubbers, Maksim Kulichenko, Robert V. Stanton, Sergei Tretiak, Cheng-Han Li, Joshua Finkelstein, Anders M. N. Niklasson, Christian F. A. Negre, Michael E. Wall
article en

Abstract

Graph-based electronic structure theory offers a scalable approach to study large, complex atomistic systems using distributed and hybrid computational platforms. We demonstrate the coupling of graph-based linear scaling electronic structure theory, as implemented in the Scalable Ecosystem, Driver, and Analyzer for Complex Chemistry Simulations (SEDACS), with semiempirical quantum chemistry methods as implemented in the PySEQM code, with Graphics Processing Unit (GPU) acceleration. This powerful combination enables efficient, scalable electronic structure calculations over many nodes, significantly reducing computational cost while naturally harnessing parallelism. Detailed analyses of parallelization efficiency, computational accuracy, and communication overheads are provided, highlighting an order-of-magnitude speedup for systems of up to 10,000 atoms.

Journal of Chemical Theory and ComputationVol. 21(21)
Los Alamos National Laboratory (US), Center for Integrated Nanotechnologies (US), Statistical Service (CY)
Openalex Percentile: Top 75%
Machine Learning in Materials Science
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