Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine learning approaches

In pursuit of an efficient solvation approach for the halogen bonded complex between molecular iodine and tetramethylthiourea that reliably reproduces experimental trends, we investigated a range of solvent models, from implicit representations to periodic metadynamics simulations alongside micro-solvation and ONIOM-based methods as robust alternatives. Implicit solvent models fail to describe halogen-bonded complexes in high-polar solvents but provide surprisingly accurate estimates of binding free energies in all low to moderately polar solvents. For accurate and reliable modeling, especially in polar media, explicit solvent representations are essential. Periodic metadynamics simulations typically provide enhanced accuracy in calculating free energy differences, particularly for systems with complex solvation behavior. However, they are computationally demanding and restricted to generalized gradient approximation functionals (GGA). To overcome this limitation and improve accuracy, we employed the machine learning perturbation theory technique, enabling the estimation of free energies at levels of theory beyond the GGA.

Authors

Institutions

Publication Details

Journal
Chemical Science
Published
2025-01-01
DOI
https://doi.org/10.1039/d5sc06336a
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine learning approaches

Pavel Hobza, Dávid Vrška, Debashree Manna, Rabindranath Lo et al.
Chemical Science
Machine Learning in Materials Science
article

Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine learning approaches

Pavel Hobza, Dávid Vrška, Debashree Manna, Rabindranath Lo, Jaroslav Vacek
article en

Abstract

In pursuit of an efficient solvation approach for the halogen bonded complex between molecular iodine and tetramethylthiourea that reliably reproduces experimental trends, we investigated a range of solvent models, from implicit representations to periodic metadynamics simulations alongside micro-solvation and ONIOM-based methods as robust alternatives. Implicit solvent models fail to describe halogen-bonded complexes in high-polar solvents but provide surprisingly accurate estimates of binding free energies in all low to moderately polar solvents. For accurate and reliable modeling, especially in polar media, explicit solvent representations are essential. Periodic metadynamics simulations typically provide enhanced accuracy in calculating free energy differences, particularly for systems with complex solvation behavior. However, they are computationally demanding and restricted to generalized gradient approximation functionals (GGA). To overcome this limitation and improve accuracy, we employed the machine learning perturbation theory technique, enabling the estimation of free energies at levels of theory beyond the GGA.

Chemical ScienceVol. 16(48)
VSB - Technical University of Ostrava (CZ), Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry (CZ), Palacký University Olomouc (CZ), Comenius University Bratislava (SK)
European Commission, Univerzita Palackého v Olomouci
Openalex Percentile: Top 76%
Machine Learning in Materials Science
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine learning approaches — Pavel Hobza, Dávid Vrška, et al. · Chemical Science (2025) | TGRS Research Map | TGRS