A New Ursane-Type Pentacyclic Triterpenoid from the Tree Bark of Sandoricum koetjape: Antibacterial, DFT, and Molecular Docking Study

Natural products have played an important role in the discovery and development of antibacterial agents. This paper described the isolation of a new ursane-type pentacyclic triterpenoid, (18β,19αH)-3-oxo-urs-12-en-27α-oic acid (<b>2</b>), from the tree bark of <i>Sandoricum koetjape</i> Merr. Along with this, five known compounds-β-caryophyllene oxide (<b>1</b>), bryononic acid (<b>3</b>), 7-deacetylgedunin (<b>4</b>), 7-deacetyl-7-oxogedunin (<b>5</b>), and 12,20-dihydroxydammar-24-en-3-one (<b>6</b>)-were successfully isolated, and one compound, 12β-hydroxydammarenolic acid (<b>7</b>), was reported in our previous report. All compounds (<b>1</b>-<b>7</b>) were tested with their antibacterial properties against two Gram-positive (<i>Enterococcus faecalis</i> and <i>Staphylococcus saprophyticus</i>) and two Gram-negative (<i>Citrobacter freundii</i> and <i>Salmonella enterica</i>) bacteria. The structures of the isolated compounds were elucidated using NMR spectroscopy and mass spectrometry data. A preliminary antibacterial assay showed that only compound <b>7</b> inhibited the growth of the tested bacteria, with an inhibition zone diameter of 7.5-9 mm at a concentration of 1 mg/mL. DFT analyses explained electronic profiles with HOMO-LUMO gaps (4.54-6.34 eV) and electrophilicity from 1.73 to 4.39 eV. To elucidate the antibacterial mechanism of compound <b>7</b>, a molecular docking study was conducted. The findings from both in vitro and in silico analyses suggest that compound <b>7</b> is a promising antibacterial candidate for further investigation.

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Journal
International Journal of Molecular Sciences
Published
2025-10-25
DOI
https://doi.org/10.3390/ijms262110389
Primary Topic
Natural product bioactivities and synthesis
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article
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article

A New Ursane-Type Pentacyclic Triterpenoid from the Tree Bark of Sandoricum koetjape: Antibacterial, DFT, and Molecular Docking Study

Thanawit Kuamit, Ade Danova, Fadjar Mulya, Muhammad Ikhlas Abdjan et al.
International Journal of Molecular Sciences
Natural product bioactivities and synthesis
article

A New Ursane-Type Pentacyclic Triterpenoid from the Tree Bark of Sandoricum koetjape: Antibacterial, DFT, and Molecular Docking Study

Thanawit Kuamit, Ade Danova, Fadjar Mulya, Muhammad Ikhlas Abdjan, Elvira Hermawati, Husnul Khatimah
article en

Abstract

Natural products have played an important role in the discovery and development of antibacterial agents. This paper described the isolation of a new ursane-type pentacyclic triterpenoid, (18β,19αH)-3-oxo-urs-12-en-27α-oic acid (<b>2</b>), from the tree bark of <i>Sandoricum koetjape</i> Merr. Along with this, five known compounds-β-caryophyllene oxide (<b>1</b>), bryononic acid (<b>3</b>), 7-deacetylgedunin (<b>4</b>), 7-deacetyl-7-oxogedunin (<b>5</b>), and 12,20-dihydroxydammar-24-en-3-one (<b>6</b>)-were successfully isolated, and one compound, 12β-hydroxydammarenolic acid (<b>7</b>), was reported in our previous report. All compounds (<b>1</b>-<b>7</b>) were tested with their antibacterial properties against two Gram-positive (<i>Enterococcus faecalis</i> and <i>Staphylococcus saprophyticus</i>) and two Gram-negative (<i>Citrobacter freundii</i> and <i>Salmonella enterica</i>) bacteria. The structures of the isolated compounds were elucidated using NMR spectroscopy and mass spectrometry data. A preliminary antibacterial assay showed that only compound <b>7</b> inhibited the growth of the tested bacteria, with an inhibition zone diameter of 7.5-9 mm at a concentration of 1 mg/mL. DFT analyses explained electronic profiles with HOMO-LUMO gaps (4.54-6.34 eV) and electrophilicity from 1.73 to 4.39 eV. To elucidate the antibacterial mechanism of compound <b>7</b>, a molecular docking study was conducted. The findings from both in vitro and in silico analyses suggest that compound <b>7</b> is a promising antibacterial candidate for further investigation.

International Journal of Molecular SciencesVol. 26(21)
Bandung Institute of Technology (ID), Chulalongkorn University (TH), Universitas Airlangga (ID), Universitas Negeri Surabaya (ID)
Openalex Percentile: Top 73%
Natural product bioactivities and synthesis
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