Non‐ <scp>RASopathy</scp> Genetic Syndromes Identified as the Molecular Cause of Disease in Patients Previously Diagnosed With Noonan Syndrome

Noonan Syndrome (NS) is a clinically and genetically heterogeneous condition characterized by typical facial dysmorphisms, short stature, congenital heart defects, and developmental delays. While variants in genes such as PTPN11, SOS1, and RAF1 account for most genetically confirmed cases, diagnosis is challenging due to phenotypic overlap with other syndromes. In this retrospective study, we reviewed 192 patients with a clinical diagnosis of NS at a single tertiary center. Genetic diagnosis of NS was confirmed in 133 patients (69.4%) and diagnosis of non-NS RASopathies was confirmed in 5 patients via targeted RASopathy panels. Exome sequencing (ES) was performed in 20 of the undiagnosed patients. In six cases, alternative genetic diagnoses were established due to variants in SETD5, BRPF1, DPH1, ACTB, CREBBP, and GATA4, genes associated with syndromes presenting overlapping phenotypes with NS. Our findings emphasize the utility of a hypothesis-free approach that uses phenotypic features to prioritize variants in resolving diagnostic uncertainty in NS-like presentations. These findings also highlight the need to broaden differential diagnoses beyond RASopathies when genetic confirmation of NS cannot be established.

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Publication Details

Journal
American Journal of Medical Genetics Part A
Published
2025-10-25
DOI
https://doi.org/10.1002/ajmg.a.64291
Primary Topic
Protein Tyrosine Phosphatases
Type
article
Field-Weighted Citation Impact
0.00

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article

Non‐ RASopathy Genetic Syndromes Identified as the Molecular Cause of Disease in Patients Previously Diagnosed With Noonan Syndrome

Raíssa Rezende, Renata C. Scalco, Alexsandra C. Malaquias, Lucas Vieira Lacerda Pires et al.
American Journal of Medical Genetics Part A
Protein Tyrosine Phosphatases
article

Non‐ RASopathy Genetic Syndromes Identified as the Molecular Cause of Disease in Patients Previously Diagnosed With Noonan Syndrome

Raíssa Rezende, Renata C. Scalco, Alexsandra C. Malaquias, Lucas Vieira Lacerda Pires, Alexander A.L. Jorge, Débora Romeo Bertola, Antônio Marcondes Lerário, Gabriela J. Kim, Laurana de Polli Cellin, Ana Maria Santillan‐Vasconez
article en

Abstract

Noonan Syndrome (NS) is a clinically and genetically heterogeneous condition characterized by typical facial dysmorphisms, short stature, congenital heart defects, and developmental delays. While variants in genes such as PTPN11, SOS1, and RAF1 account for most genetically confirmed cases, diagnosis is challenging due to phenotypic overlap with other syndromes. In this retrospective study, we reviewed 192 patients with a clinical diagnosis of NS at a single tertiary center. Genetic diagnosis of NS was confirmed in 133 patients (69.4%) and diagnosis of non-NS RASopathies was confirmed in 5 patients via targeted RASopathy panels. Exome sequencing (ES) was performed in 20 of the undiagnosed patients. In six cases, alternative genetic diagnoses were established due to variants in SETD5, BRPF1, DPH1, ACTB, CREBBP, and GATA4, genes associated with syndromes presenting overlapping phenotypes with NS. Our findings emphasize the utility of a hypothesis-free approach that uses phenotypic features to prioritize variants in resolving diagnostic uncertainty in NS-like presentations. These findings also highlight the need to broaden differential diagnoses beyond RASopathies when genetic confirmation of NS cannot be established.

American Journal of Medical Genetics Part AVol. 200(3)
University of Michigan (US), Irmandade da Santa Casa de Misericórdia de São Paulo (BR), Michigan Medicine (US), Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo (BR)
Fundação de Amparo à Pesquisa do Estado de São Paulo, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, Conselho Nacional de Desenvolvimento Científico e Tecnológico
Openalex Percentile: Top 73%
Protein Tyrosine Phosphatases
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