Discovery of a Heme‐Dependent Enzyme Catalyzing Nitrogen–Nitrogen Bond Formation in Kinamycin Biosynthesis

Abstract A nitrogen–nitrogen (N─N) bond is a core feature of diverse natural products with interesting structural and biological properties. Kinamycin and lomaiviticin, featuring a diazobenzo[b]fluorene core, exhibit exceptional potency as chemotherapeutic agents. However, the N─N bond forming step in their biosynthesis has remained elusive. Through extensive mutagenesis and biochemical studies, we herein report that Alp1J, belonging to a new family of heme‐dependent enzymes, catalyzes the N─N bond formation in kinamycin biosynthesis. Interestingly, Alp1J forms a stable complex with its partner ferredoxin Alp1I, which can protect the cofactors and is critical for the N─N bond formation activity. With its partner ferredoxin, Alp1J catalyzes formation of the hydrazine intermediate directly from l ‐aspartate and nitrite by a pathway involving four‐electron reduction. Our findings expand the knowledge of enzymatic N─N bond formation and show the potential for the discovery and development of novel N─N bond containing natural products through genome mining and synthetic biology.

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Publication Details

Journal
Angewandte Chemie
Published
2025-10-24
DOI
https://doi.org/10.1002/ange.202513778
Primary Topic
Polyamine Metabolism and Applications
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article
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article

Discovery of a Heme‐Dependent Enzyme Catalyzing Nitrogen–Nitrogen Bond Formation in Kinamycin Biosynthesis

Shuangjun Lin, Yuchun Zhao, Zhihong Xiao, Xiang-Jing Liang et al.
Angewandte Chemie
Polyamine Metabolism and Applications
article

Discovery of a Heme‐Dependent Enzyme Catalyzing Nitrogen–Nitrogen Bond Formation in Kinamycin Biosynthesis

Shuangjun Lin, Yuchun Zhao, Zhihong Xiao, Xiang-Jing Liang, Xinyi He, Xiangyang Liu, Ming Jiang, Chenxi Zhu, Zixin Deng
article en

Abstract

Abstract A nitrogen–nitrogen (N─N) bond is a core feature of diverse natural products with interesting structural and biological properties. Kinamycin and lomaiviticin, featuring a diazobenzo[b]fluorene core, exhibit exceptional potency as chemotherapeutic agents. However, the N─N bond forming step in their biosynthesis has remained elusive. Through extensive mutagenesis and biochemical studies, we herein report that Alp1J, belonging to a new family of heme‐dependent enzymes, catalyzes the N─N bond formation in kinamycin biosynthesis. Interestingly, Alp1J forms a stable complex with its partner ferredoxin Alp1I, which can protect the cofactors and is critical for the N─N bond formation activity. With its partner ferredoxin, Alp1J catalyzes formation of the hydrazine intermediate directly from l ‐aspartate and nitrite by a pathway involving four‐electron reduction. Our findings expand the knowledge of enzymatic N─N bond formation and show the potential for the discovery and development of novel N─N bond containing natural products through genome mining and synthetic biology.

Angewandte ChemieVol. 137(50)
Shanghai Jiao Tong University (CN)
Openalex Percentile: Top 73%
Polyamine Metabolism and Applications
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Discovery of a Heme‐Dependent Enzyme Catalyzing Nitrogen–Nitrogen Bond Formation in Kinamycin Biosynthesis — Shuangjun Lin, Yuchun Zhao, et al. · Angewandte Chemie (2025) | TGRS Research Map | TGRS