Novel Biomarker Identification for Acute Coronary Syndrome via Integrating WGCNA and Machine Learning

Immune cells in early atherosclerotic lesions promote inflammation and acute coronary syndrome (ACS), but the precise link between inflammation and ACS progression is still unclear. In this study, we analysed mRNA and miRNA expression profiles of ACS from GEO, identifying 98 mRNAs and 627 miRNAs by differentially expressed analysis. GSEA revealed abnormal activation of immune- and inflammation-related pathways, such as T cell receptor signalling pathway and cell adhesion molecules cams. The biomarkers ARG1, HECW2, and PFKFB3 were identified through WGCNA, LASSO, and SVM-RFE. Diagnostic performance and miRNA-mRNA interaction network were performed using ROC curves and Cytoscape. CIBERSORT analysis revealed that the levels of CD4 memory resting T cells were downregulated, whereas monocytes and neutrophils were upregulated. ARG1, HECW2 and PFKFB3 showed close relationships with specific immune cell types. These findings offer new avenues for ACS treatments and identify ARG1, HECW2 and PFKFB3 as potential biomarkers.

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Publication Details

Journal
IET Systems Biology
Published
2025-01-01
DOI
https://doi.org/10.1049/syb2.70039
Primary Topic
Atherosclerosis and Cardiovascular Diseases
Type
article
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article

Novel Biomarker Identification for Acute Coronary Syndrome via Integrating WGCNA and Machine Learning

Li Zhu, Jie Zheng, Zhang Yin, Fei Gong
IET Systems Biology
Atherosclerosis and Cardiovascular Diseases
article

Novel Biomarker Identification for Acute Coronary Syndrome via Integrating WGCNA and Machine Learning

Li Zhu, Jie Zheng, Zhang Yin, Fei Gong
article en

Abstract

Immune cells in early atherosclerotic lesions promote inflammation and acute coronary syndrome (ACS), but the precise link between inflammation and ACS progression is still unclear. In this study, we analysed mRNA and miRNA expression profiles of ACS from GEO, identifying 98 mRNAs and 627 miRNAs by differentially expressed analysis. GSEA revealed abnormal activation of immune- and inflammation-related pathways, such as T cell receptor signalling pathway and cell adhesion molecules cams. The biomarkers ARG1, HECW2, and PFKFB3 were identified through WGCNA, LASSO, and SVM-RFE. Diagnostic performance and miRNA-mRNA interaction network were performed using ROC curves and Cytoscape. CIBERSORT analysis revealed that the levels of CD4 memory resting T cells were downregulated, whereas monocytes and neutrophils were upregulated. ARG1, HECW2 and PFKFB3 showed close relationships with specific immune cell types. These findings offer new avenues for ACS treatments and identify ARG1, HECW2 and PFKFB3 as potential biomarkers.

IET Systems BiologyVol. 19(1)
Nantong University (CN), Affiliated Hospital of Nantong University (CN), Henan University Huaihe Hospital and Huaihe Clinical Institute (CN), Wuhan Puai Hospital (CN), Wuhan Third Hospital (CN), Wuhan University of Science and Technology (CN)
Openalex Percentile: Top 68%
Atherosclerosis and Cardiovascular Diseases
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Novel Biomarker Identification for Acute Coronary Syndrome via Integrating WGCNA and Machine Learning — Li Zhu, Jie Zheng, et al. · IET Systems Biology (2025) | TGRS Research Map | TGRS