Study of optimal method of Heterodera glycines sample preparation for molecular diagnostics

In this study, it is optimized by the methods of preparing samples for the release of genetic material (DNA) from soybean cyst-forming nematode Heterodera glycines , which is necessary for accurate identification. Various modifications of ready-made reagent kits from Russian and foreign manufacturers were tested: DNA-Extrane-2, FitoSorb, TsytoSorb, ORB-GMO-A by Sintol LLC (Russia), Proba-GS, Proba-NK by AgroDiagnostika LLC, and QIAamp DNA Mini Kit by Qiagen (Germany). By testing the PCR method In real time, the sensitivity of Heterodera glycines total DNA release was tested using a test system consisting of forward and reverse primers and a modified probe: SCNrtF (5-AAATTCCAGGCCGCTATCTC-3), SCNrtR (5CGTGGACTGAACTGAACTGGACAAAG-3), SCNrtP (5-FAM/-TGGGCTGGGTGCTTCTAGAACTTTT-/ BHQ-1/-3).

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Publication Details

Journal
RUDN Journal of Agronomy and Animal Industries
Published
2025-10-24
DOI
https://doi.org/10.22363/2312-797x-2025-20-2-274-286
Primary Topic
Nematode management and characterization studies
Type
article
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article

Study of optimal method of Heterodera glycines sample preparation for molecular diagnostics

Galina N. Bondarenko, A.V. Ivanov
RUDN Journal of Agronomy and Animal Industries
Nematode management and characterization studies
article

Study of optimal method of Heterodera glycines sample preparation for molecular diagnostics

Galina N. Bondarenko, A.V. Ivanov
article en

Abstract

In this study, it is optimized by the methods of preparing samples for the release of genetic material (DNA) from soybean cyst-forming nematode Heterodera glycines , which is necessary for accurate identification. Various modifications of ready-made reagent kits from Russian and foreign manufacturers were tested: DNA-Extrane-2, FitoSorb, TsytoSorb, ORB-GMO-A by Sintol LLC (Russia), Proba-GS, Proba-NK by AgroDiagnostika LLC, and QIAamp DNA Mini Kit by Qiagen (Germany). By testing the PCR method In real time, the sensitivity of Heterodera glycines total DNA release was tested using a test system consisting of forward and reverse primers and a modified probe: SCNrtF (5-AAATTCCAGGCCGCTATCTC-3), SCNrtR (5CGTGGACTGAACTGAACTGGACAAAG-3), SCNrtP (5-FAM/-TGGGCTGGGTGCTTCTAGAACTTTT-/ BHQ-1/-3).

RUDN Journal of Agronomy and Animal IndustriesVol. 20(2)
All-Union Scientific Research Institute of Plant Quarantine (RU)
Openalex Percentile: Top 77%
Nematode management and characterization studies
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