Combining antigenic data from public sources gives an early indication of the immune escape of emerging virus variants

The rapid spread of the Omicron BA.1 (B.1.1.529.1) SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus 2) variant in 2021 resulted in international efforts to quickly assess its escape from immunity generated by vaccines and previous infections. Numerous laboratories published BA.1 neutralization data as preprints and reports. We collated this data in real time and regularly presented updates of the aggregated results in US, European and WHO research and advisory settings. Here, we retrospectively analyzed the accuracy of these aggregations from 85 different sources published during a time period from 2021/12/08 up to 2022/08/14. We found that the mean titer fold change from wild type-like variants to BA.1, a standard measure of a variant's immune escape, remained stable after the first 15 days of data reporting in people who were twice vaccinated, and incoming data increased the confidence in this quantity. Further, it is possible to build reliable, stable antigenic maps from this collated data already after one month of incoming data. We here demonstrate that combining early reports from variable, independent sources can rapidly indicate a new virus variant's immune escape and can therefore be of immense benefit for public health.

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Publication Details

Journal
Scientific Reports
Published
2025-10-24
DOI
https://doi.org/10.1038/s41598-025-19578-3
Primary Topic
SARS-CoV-2 and COVID-19 Research
Type
article
Field-Weighted Citation Impact
0.00

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article

Combining antigenic data from public sources gives an early indication of the immune escape of emerging virus variants

Eric B. LeGresley, Derek J. Smith, Samuel Wilks, Antonia Netzl et al.
Scientific Reports
SARS-CoV-2 and COVID-19 Research
article

Combining antigenic data from public sources gives an early indication of the immune escape of emerging virus variants

Eric B. LeGresley, Derek J. Smith, Samuel Wilks, Antonia Netzl, Sina Türeli, Barbara Mühlemann
article en

Abstract

The rapid spread of the Omicron BA.1 (B.1.1.529.1) SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus 2) variant in 2021 resulted in international efforts to quickly assess its escape from immunity generated by vaccines and previous infections. Numerous laboratories published BA.1 neutralization data as preprints and reports. We collated this data in real time and regularly presented updates of the aggregated results in US, European and WHO research and advisory settings. Here, we retrospectively analyzed the accuracy of these aggregations from 85 different sources published during a time period from 2021/12/08 up to 2022/08/14. We found that the mean titer fold change from wild type-like variants to BA.1, a standard measure of a variant's immune escape, remained stable after the first 15 days of data reporting in people who were twice vaccinated, and incoming data increased the confidence in this quantity. Further, it is possible to build reliable, stable antigenic maps from this collated data already after one month of incoming data. We here demonstrate that combining early reports from variable, independent sources can rapidly indicate a new virus variant's immune escape and can therefore be of immense benefit for public health.

Scientific ReportsVol. 15(1)
University of Cambridge (GB), Humboldt-Universität zu Berlin (DE), German Center for Infection Research (DE), Berlin Institute of Health at Charité - Universitätsmedizin Berlin (DE)
Cambridge Trust, Gates Cambridge Trust, National Institutes of Health, Medical Research Council, National Institute of Allergy and Infectious Diseases
Openalex Percentile: Top 64%
SARS-CoV-2 and COVID-19 Research
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