Deciphering supramolecular synthons in OXYMA-B salts: Crystallographic characterization and theoretical evaluation of hydrogen bond networks

• Four new crystal structures of OXYMA-B salts have been discovered, prepared and their crystal structures analyzed using DFT calculations • OXYMA-B salts structures showed that directional N–H···O bonds consistently contribute the most to the stability of the assemblies, with ancillary contacts playing a secondary yet supportive role • The electron-rich nature of the OXYMA-B anion provides multiple sites for H-bond acceptance, leading to diverse supramolecular synthons Four new crystal structures of OXYMA-B in its anionic form have been synthesized and structurally characterized via single-crystal X-ray diffraction. The new salts incorporate protonated amine-based cations including 1-phenylpiperazine (1PP), 1,4-dioxa-8-azaspiro[4.5]decane (DASD), ethylenediamine (ETDA), and pyrrolidine (Pyr), which function as efficient hydrogen bond (H-bond) donors. The electron-rich nature of the OXYMA-B anion provides multiple sites for H-bond acceptance, leading to diverse supramolecular synthons including R 1 2 (5), R 1 2 (6), R 4 2 (8) and R 4 3 (12). The theoretical component of this study is based on density functional theory (DFT) calculations to dissect and characterize the individual H-bonded synthons using the quantum theory of atoms in molecules (QTAIM) framework. Additionally, interaction energies of discrete H-bonds have been quantified to rationalize their strength and directional preferences, showing that directional NH···O bonds contribute the most to the stability of the assemblies, with ancillary contacts playing a secondary but supportive role. The total interaction energies range from –34.0 to –50.0 kcal/mol, underscoring the critical role of hydrogen bonding in dictating the supramolecular architectures. This combined experimental–computational approach sheds light on the structural determinants driving supramolecular organization in OXYMA-B-based salts and highlights their potential for crystal engineering applications.

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Publication Details

Journal
Journal of Molecular Structure
Published
2025-10-24
DOI
https://doi.org/10.1016/j.molstruc.2025.144488
Citations
1
Primary Topic
Crystallography and molecular interactions
Type
article
Field-Weighted Citation Impact
1.75
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article

Deciphering supramolecular synthons in OXYMA-B salts: Crystallographic characterization and theoretical evaluation of hydrogen bond networks

Fernando Alberício, Antonio Frontera, Rafael Barbas, Rafel Prohens et al.
1 citations
Journal of Molecular Structure
Crystallography and molecular interactions
1.75
article

Deciphering supramolecular synthons in OXYMA-B salts: Crystallographic characterization and theoretical evaluation of hydrogen bond networks

Fernando Alberício, Antonio Frontera, Rafael Barbas, Rafel Prohens, Houda Marouani, Mahdi Jemai
article en
1 citations

Abstract

• Four new crystal structures of OXYMA-B salts have been discovered, prepared and their crystal structures analyzed using DFT calculations • OXYMA-B salts structures showed that directional N–H···O bonds consistently contribute the most to the stability of the assemblies, with ancillary contacts playing a secondary yet supportive role • The electron-rich nature of the OXYMA-B anion provides multiple sites for H-bond acceptance, leading to diverse supramolecular synthons Four new crystal structures of OXYMA-B in its anionic form have been synthesized and structurally characterized via single-crystal X-ray diffraction. The new salts incorporate protonated amine-based cations including 1-phenylpiperazine (1PP), 1,4-dioxa-8-azaspiro[4.5]decane (DASD), ethylenediamine (ETDA), and pyrrolidine (Pyr), which function as efficient hydrogen bond (H-bond) donors. The electron-rich nature of the OXYMA-B anion provides multiple sites for H-bond acceptance, leading to diverse supramolecular synthons including R 1 2 (5), R 1 2 (6), R 4 2 (8) and R 4 3 (12). The theoretical component of this study is based on density functional theory (DFT) calculations to dissect and characterize the individual H-bonded synthons using the quantum theory of atoms in molecules (QTAIM) framework. Additionally, interaction energies of discrete H-bonds have been quantified to rationalize their strength and directional preferences, showing that directional NH···O bonds contribute the most to the stability of the assemblies, with ancillary contacts playing a secondary but supportive role. The total interaction energies range from –34.0 to –50.0 kcal/mol, underscoring the critical role of hydrogen bonding in dictating the supramolecular architectures. This combined experimental–computational approach sheds light on the structural determinants driving supramolecular organization in OXYMA-B-based salts and highlights their potential for crystal engineering applications.

Journal of Molecular StructureVol. 1352
University of Carthage (TN), Biomedical Research Networking Center in Bioengineering, Biomaterials and Nanomedicine (ES), Universitat de les Illes Balears (ES), Universitat de Barcelona (ES)
Openalex Percentile: Top 12%
Crystallography and molecular interactions
1.75
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