ShortCake: an integrated platform for efficient and reproducible single-cell analysis

The ShortCake image is available on DockerHub (https://hub.docker.com/r/rnakato/shortcake) and Zenodo (DOIs: 10.5281/zenodo.17116765 and 10.5281/zenodo.17118158). The source code is available on GitHub (https://github.com/rnakato/ShortCake).

Authors

Luís Augusto Eijy Nagai (ORCID: https://orcid.org/0000-0002-7672-8554)
Ryuichiro Nakato (ORCID: https://orcid.org/0000-0003-3019-5817)

Institutions

Quantitative BioSciences (US)
The University of Tokyo (JP)

Publication Details

Journal: Bioinformatics
Published: 2025-10-02
DOI: https://doi.org/10.1093/bioinformatics/btaf559
Primary Topic: Single-cell and spatial transcriptomics
Type: article
Field-Weighted Citation Impact: 0.00

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article

ShortCake: an integrated platform for efficient and reproducible single-cell analysis

Luís Augusto Eijy Nagai, Ryuichiro Nakato

Oct 2, 2025

Bioinformatics

Single-cell and spatial transcriptomics

article

ShortCake: an integrated platform for efficient and reproducible single-cell analysis

Luís Augusto Eijy Nagai, Ryuichiro Nakato

October 2, 2025article en

Abstract

BioinformaticsVol. 41(11)

Quantitative BioSciences (US), The University of Tokyo (JP)

Openalex Percentile: Top 73%

Single-cell and spatial transcriptomics

DOI Open Access PDF OpenAlex

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ShortCake: an integrated platform for efficient and reproducible single-cell analysis — Luís Augusto Eijy Nagai, Ryuichiro Nakato · Bioinformatics (2025) | TGRS Research Map | TGRS