5′,8-cyclo-dAdo and 8-oxo-dAdo DNA Lesions Are Both Substrates of Adenosine Deaminase: A Preliminary Study

Genetic information, whether inside or outside the nucleus, is exposed to a variety of harmful physico-chemical factors. Although DNA damage repair systems have been extensively studied, little information about post-repair and non-genomic DNA damage metabolism is available in the literature. Adenosine deaminase (ADA) is an abundant enzyme found on both sides of the cell membrane that regulates the concentration of adenine derivatives. In this article, it has been shown that 7,8-dihydro-8-oxo-2'-deoxyadenosine (<sup>OXO</sup>dAdo) and (5'<i>R</i>/<i>S</i>) 5',8-cyclo-2'-deoxyadenosine ((5'<i>R</i>/<i>S</i>)cdAdo) are suitable substrates for ADA. For this purpose, theoretical Density Functional Tight Binding and RP-HPLC analyses were applied. The products of ADA activity, i.e., <sup>OXO</sup>dIno (7,8-dihydro-8-oxo-2'-deoxyinosine) and (5'<i>R</i>/<i>S</i>) cdIno ((5'<i>R</i>/<i>S</i>) 8-cyclo-2'-deoxyinosine), were identified and confirmed by high-resolution mass spectroscopy. Although the (5'<i>R</i>) and (5'<i>S</i>)cdAdo enzymatic deamination processes are much slower (34% and 32% after 168 h, respectively) than the process observed for dAdo, 5',8-cyclo-2'-deoxyinosine should be considered when monitoring cyclopurine levels in physiological fluids. The same should be considered in the case of <sup>OXO</sup>dAdo, which is completely converted to <sup>OXO</sup>dIno within one minute and may therefore be less visible than <sup>OXO</sup>dGuo during mass spectroscopy analysis. Both these observations are important, given the abundance of 2'-deoxyadenosine on both sides of the cell membrane and its potential conversion into <sup>OXO</sup>dAdo and (5'<i>R</i>/<i>S</i>)cdAdo. They may also explain why the observed level of <sup>OXO</sup>dAdo is much lower than that of <sup>OXO</sup>dGuo in cells and physiological fluids, even though their difference in ionisation potential is only 0.25 eV. Future studies are needed to further investigate the metabolism of DNA damage and to identify the enzymes involved in nucleic acid biochemistry.

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Journal
Cells
Published
2025-10-23
DOI
https://doi.org/10.3390/cells14211665
Primary Topic
Adenosine and Purinergic Signaling
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article
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article

5′,8-cyclo-dAdo and 8-oxo-dAdo DNA Lesions Are Both Substrates of Adenosine Deaminase: A Preliminary Study

Bolesław T. Karwowski
Cells
Adenosine and Purinergic Signaling
article

5′,8-cyclo-dAdo and 8-oxo-dAdo DNA Lesions Are Both Substrates of Adenosine Deaminase: A Preliminary Study

Bolesław T. Karwowski
article en

Abstract

Genetic information, whether inside or outside the nucleus, is exposed to a variety of harmful physico-chemical factors. Although DNA damage repair systems have been extensively studied, little information about post-repair and non-genomic DNA damage metabolism is available in the literature. Adenosine deaminase (ADA) is an abundant enzyme found on both sides of the cell membrane that regulates the concentration of adenine derivatives. In this article, it has been shown that 7,8-dihydro-8-oxo-2'-deoxyadenosine (<sup>OXO</sup>dAdo) and (5'<i>R</i>/<i>S</i>) 5',8-cyclo-2'-deoxyadenosine ((5'<i>R</i>/<i>S</i>)cdAdo) are suitable substrates for ADA. For this purpose, theoretical Density Functional Tight Binding and RP-HPLC analyses were applied. The products of ADA activity, i.e., <sup>OXO</sup>dIno (7,8-dihydro-8-oxo-2'-deoxyinosine) and (5'<i>R</i>/<i>S</i>) cdIno ((5'<i>R</i>/<i>S</i>) 8-cyclo-2'-deoxyinosine), were identified and confirmed by high-resolution mass spectroscopy. Although the (5'<i>R</i>) and (5'<i>S</i>)cdAdo enzymatic deamination processes are much slower (34% and 32% after 168 h, respectively) than the process observed for dAdo, 5',8-cyclo-2'-deoxyinosine should be considered when monitoring cyclopurine levels in physiological fluids. The same should be considered in the case of <sup>OXO</sup>dAdo, which is completely converted to <sup>OXO</sup>dIno within one minute and may therefore be less visible than <sup>OXO</sup>dGuo during mass spectroscopy analysis. Both these observations are important, given the abundance of 2'-deoxyadenosine on both sides of the cell membrane and its potential conversion into <sup>OXO</sup>dAdo and (5'<i>R</i>/<i>S</i>)cdAdo. They may also explain why the observed level of <sup>OXO</sup>dAdo is much lower than that of <sup>OXO</sup>dGuo in cells and physiological fluids, even though their difference in ionisation potential is only 0.25 eV. Future studies are needed to further investigate the metabolism of DNA damage and to identify the enzymes involved in nucleic acid biochemistry.

CellsVol. 14(21)
Medical University of Lodz (PL)
Openalex Percentile: Top 68%
Adenosine and Purinergic Signaling
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5′,8-cyclo-dAdo and 8-oxo-dAdo DNA Lesions Are Both Substrates of Adenosine Deaminase: A Preliminary Study — Bolesław T. Karwowski · Cells (2025) | TGRS Research Map | TGRS