Untangling the fusion of spatial omics and mechanobiology

Cellular biophysical properties are increasingly linked to disease development, including muscular dystrophy, cancer, glaucoma, and other conditions. Transcription profiles of various types have been utilized to elucidate the relationship between genes and their regulatory functions. While spatial transcriptomics creates high-resolution maps of gene regulation in tissues, it does not capture the mechanically coordinated responses of cells based on their transcriptional profiles and cell locations. Mechanobiology, on the other hand, studies how cells perceive and respond to forces but lacks genomic information. In this paper, we explore the emergence of an integrative platform called spatial mechano-transcriptomics. This method combines spatial transcriptomic and mechanical data from the same cells within a timeframe suitable for diagnostic procedures. Spatial mechano-transcriptomics examines the relationship between physical properties, including cell membrane stiffness, and differences in the cell's transcription profile, which could be used to predict disease states. Integrating spatial and mechanical observations has the potential to revolutionize precision diagnostics and lead to the development of new therapeutics, resulting in significant advances in biomedical research.

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Publication Details

Journal
Progress in Biomedical Engineering
Published
2025-10-23
DOI
https://doi.org/10.1088/2516-1091/ae16f2
Primary Topic
Cellular Mechanics and Interactions
Type
article
Field-Weighted Citation Impact
0.00

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article

Untangling the fusion of spatial omics and mechanobiology

Ahmet F. Coskun, Nicholas Zhang, Felix Rivera Moctezuma, Abhijeet Venkataraman et al.
Progress in Biomedical Engineering
Cellular Mechanics and Interactions
article

Untangling the fusion of spatial omics and mechanobiology

Ahmet F. Coskun, Nicholas Zhang, Felix Rivera Moctezuma, Abhijeet Venkataraman, Samuel Dembowitz
article en

Abstract

Cellular biophysical properties are increasingly linked to disease development, including muscular dystrophy, cancer, glaucoma, and other conditions. Transcription profiles of various types have been utilized to elucidate the relationship between genes and their regulatory functions. While spatial transcriptomics creates high-resolution maps of gene regulation in tissues, it does not capture the mechanically coordinated responses of cells based on their transcriptional profiles and cell locations. Mechanobiology, on the other hand, studies how cells perceive and respond to forces but lacks genomic information. In this paper, we explore the emergence of an integrative platform called spatial mechano-transcriptomics. This method combines spatial transcriptomic and mechanical data from the same cells within a timeframe suitable for diagnostic procedures. Spatial mechano-transcriptomics examines the relationship between physical properties, including cell membrane stiffness, and differences in the cell's transcription profile, which could be used to predict disease states. Integrating spatial and mechanical observations has the potential to revolutionize precision diagnostics and lead to the development of new therapeutics, resulting in significant advances in biomedical research.

Progress in Biomedical EngineeringVol. 8(1)
Georgia Institute of Technology (US), The Wallace H. Coulter Department of Biomedical Engineering (US)
National Science Foundation, Georgia Institute of Technology, Emory University, National Institutes of Health, National Institute of General Medical Sciences
Openalex Percentile: Top 68%
Cellular Mechanics and Interactions
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Untangling the fusion of spatial omics and mechanobiology — Ahmet F. Coskun, Nicholas Zhang, et al. · Progress in Biomedical Engineering (2025) | TGRS Research Map | TGRS