An Adapted Similarity Kernel and Generalized Convex Hull for Molecular Crystal Structure Prediction

We adapted an existing approach to identifying stabilizable crystal structures from prediction setsthe Generalized Convex Hull (GCH)to improve its application to molecular crystal structures. This was achieved by modifying the Smooth Overlap of Atomic Positions (SOAP) kernel to define the similarity of molecular crystal structures in a more physically motivated way. The use of the adapted similarity kernel was assessed for several organic molecular crystal landscapes, demonstrating improved interpretability of the resulting machine-learned descriptors. We also demonstrate that the adapted kernel results in improved performance in predicting lattice energies using Gaussian process regression. Our overall findings highlight a sensitivity of similarity kernel-based landscape analysis methods to kernel construction, which should be considered when applying these methods.

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Publication Details

Journal
Crystal Growth & Design
Published
2025-10-23
DOI
https://doi.org/10.1021/acs.cgd.5c01220
Citations
1
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.52
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article

An Adapted Similarity Kernel and Generalized Convex Hull for Molecular Crystal Structure Prediction

Graeme M. Day, Michele Ceriotti, Jennie Martin
1 citations
Crystal Growth & Design
Machine Learning in Materials Science
0.52
article

An Adapted Similarity Kernel and Generalized Convex Hull for Molecular Crystal Structure Prediction

Graeme M. Day, Michele Ceriotti, Jennie Martin
article en
1 citations

Abstract

We adapted an existing approach to identifying stabilizable crystal structures from prediction setsthe Generalized Convex Hull (GCH)to improve its application to molecular crystal structures. This was achieved by modifying the Smooth Overlap of Atomic Positions (SOAP) kernel to define the similarity of molecular crystal structures in a more physically motivated way. The use of the adapted similarity kernel was assessed for several organic molecular crystal landscapes, demonstrating improved interpretability of the resulting machine-learned descriptors. We also demonstrate that the adapted kernel results in improved performance in predicting lattice energies using Gaussian process regression. Our overall findings highlight a sensitivity of similarity kernel-based landscape analysis methods to kernel construction, which should be considered when applying these methods.

Crystal Growth & DesignVol. 25(21)
University of Southampton (GB), École Polytechnique Fédérale de Lausanne (CH)
Openalex Percentile: Top 31%
Machine Learning in Materials Science
0.52
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An Adapted Similarity Kernel and Generalized Convex Hull for Molecular Crystal Structure Prediction — Graeme M. Day, Michele Ceriotti, et al. · Crystal Growth & Design (2025) | TGRS Research Map | TGRS