SPOT: Spectral Optimal Transport for Graph Domain Generalization

Graph neural networks (GNNs) have essentially taken over as the de facto model for learning graph-structured data. However, the majority of existing methods perform transductive learning in a known graph, which is unable to tackle abundant in-the-wild unseen graphs with potential domain shifts. Even worse, these graphs, accompanied by domain shifts on structural topology and node attributes, bring in vulnerable data bias and thus a huge drop in performance. To tackle this, we propose a novel GNN method named spectral optimal transport (SPOT) for effective domain generalization on graphs. Our method is motivated by the fact that the high-frequency graph spectrum is more likely to indicate domain differences. In particular, we formulate the structural augmentation as an optimal transport problem to retain low-frequency key knowledge and solve the problem using Sinkhorn-Knopp algorithm. In addition, we incorporate an adaptive perturbation strategy to deep features, where the direction of the additive noise is determined by the homophily degrees to maintain semantic properties. Accordingly, we meticulously construct a collection of real-world benchmark datasets to assess the domain generalization capability of our model on graphs, and extensive experiments confirm the effectiveness of our proposed SPOT.

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Publication Details

Journal
ACM Transactions on Knowledge Discovery from Data
Published
2025-10-23
DOI
https://doi.org/10.1145/3772720
Primary Topic
Advanced Graph Neural Networks
Type
article
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article

SPOT: Spectral Optimal Transport for Graph Domain Generalization

Wei Ju, Xian‐Sheng Hua, Zhonghui Gu, Zhiping Xiao et al.
ACM Transactions on Knowledge Discovery from Data
Advanced Graph Neural Networks
article

SPOT: Spectral Optimal Transport for Graph Domain Generalization

Wei Ju, Xian‐Sheng Hua, Zhonghui Gu, Zhiping Xiao, Xiao Luo, Ming Zhang, Yusheng Zhao, Junyu Luo
article en

Abstract

Graph neural networks (GNNs) have essentially taken over as the de facto model for learning graph-structured data. However, the majority of existing methods perform transductive learning in a known graph, which is unable to tackle abundant in-the-wild unseen graphs with potential domain shifts. Even worse, these graphs, accompanied by domain shifts on structural topology and node attributes, bring in vulnerable data bias and thus a huge drop in performance. To tackle this, we propose a novel GNN method named spectral optimal transport (SPOT) for effective domain generalization on graphs. Our method is motivated by the fact that the high-frequency graph spectrum is more likely to indicate domain differences. In particular, we formulate the structural augmentation as an optimal transport problem to retain low-frequency key knowledge and solve the problem using Sinkhorn-Knopp algorithm. In addition, we incorporate an adaptive perturbation strategy to deep features, where the direction of the additive noise is determined by the homophily degrees to maintain semantic properties. Accordingly, we meticulously construct a collection of real-world benchmark datasets to assess the domain generalization capability of our model on graphs, and extensive experiments confirm the effectiveness of our proposed SPOT.

ACM Transactions on Knowledge Discovery from DataVol. 20(1)
University of Wisconsin–Madison (US), University of Washington (US), Peking University (CN), Center for Life Sciences (CN)
Openalex Percentile: Top 84%
Advanced Graph Neural Networks
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SPOT: Spectral Optimal Transport for Graph Domain Generalization — Wei Ju, Xian‐Sheng Hua, et al. · ACM Transactions on Knowledge Discovery from Data (2025) | TGRS Research Map | TGRS