Solvent-mediated mechanism and kinetics of glucose mutarotation from enhanced sampling simulations

Understanding how solvent molecules participate in chemical reaction mechanisms remains a central challenge in molecular simulations. Here, we investigate the mechanism and kinetics of glucose mutarotation in aqueous solution using a combined well-tempered metadynamics and mean force integration approach, within the framework of canonical transition state theory. We compute free energy landscapes and kinetic rate coefficients for the α → β mutarotation in pure water, as well as in systems representative of water/methanol and water/acetone mixtures. Our simulations indicate that ring opening and closure occur via concerted, solvent-assisted pathways, with ring opening identified as the rate-determining step. The temperature dependence of the predicted kinetic constant is quantitatively consistent with experimental data, while the reactivity modulation by organic co-solvents is captured qualitatively. Overall, the results provide molecular-level insight into solvent-mediated carbohydrate chemistry, demonstrating that the solvent participates in all key reactive steps and highlighting how enhanced sampling techniques can yield mechanistic and kinetic information in explicitly solvated reactive systems.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2025-10-23
DOI
https://doi.org/10.1063/5.0288357
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
0.00

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article

Solvent-mediated mechanism and kinetics of glucose mutarotation from enhanced sampling simulations

Marco Mazzotti, Matteo Salvalaglio, Matteo Paloni, Francesco Serse et al.
The Journal of Chemical Physics
Protein Structure and Dynamics
article

Solvent-mediated mechanism and kinetics of glucose mutarotation from enhanced sampling simulations

Marco Mazzotti, Matteo Salvalaglio, Matteo Paloni, Francesco Serse, Silvio Trespi
article en

Abstract

Understanding how solvent molecules participate in chemical reaction mechanisms remains a central challenge in molecular simulations. Here, we investigate the mechanism and kinetics of glucose mutarotation in aqueous solution using a combined well-tempered metadynamics and mean force integration approach, within the framework of canonical transition state theory. We compute free energy landscapes and kinetic rate coefficients for the α → β mutarotation in pure water, as well as in systems representative of water/methanol and water/acetone mixtures. Our simulations indicate that ring opening and closure occur via concerted, solvent-assisted pathways, with ring opening identified as the rate-determining step. The temperature dependence of the predicted kinetic constant is quantitatively consistent with experimental data, while the reactivity modulation by organic co-solvents is captured qualitatively. Overall, the results provide molecular-level insight into solvent-mediated carbohydrate chemistry, demonstrating that the solvent participates in all key reactive steps and highlighting how enhanced sampling techniques can yield mechanistic and kinetic information in explicitly solvated reactive systems.

The Journal of Chemical PhysicsVol. 163(16)
Thomas Young Centre (GB), ETH Zurich (CH), University College London (GB), Politecnico di Milano (IT)
UK Research and Innovation
Openalex Percentile: Top 73%
Protein Structure and Dynamics
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