Chromosome-level genome assembly of Turpan wonder gecko (Teratoscincus roborowskii) reveals olfactory candidate genes

Teratoscincus roborowskii, an endemic species to China, is of particular interest due to its unique biological characteristics. It is a strictly nocturnal reptile that inhabits extremely harsh environmen. In this study, we generated the first chromosome level genome assembly of T. roborowskii using PacBio circular consensus sequencing (CCS) combined with Hi-C scaffolding. The genome assembly at the contig level was mounted onto chromosomes, with approximately 2,077.46 Mb of sequence allocated to 18 chromosomes, accounting for 99.92% of the total length. Among the sequences mapped to the chromosomes, approximately 2,070.96 Mb have determined order and orientation, making up 99.69% of the total length of the mapped sequences, with a contig N50 and scaffold N50 values of 117.38 Mb and 156.21 Mb respectively, and contains 21,341 predicted protein-coding genes, of which 99.62% were successfully annotated against public database. This high-quality genome not only fills a critical gap in genomic resources for this species, but also provides a valuable foundation for future study on its evolutionary history, gene functions and conservation biology.

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Journal
Scientific Data
Published
2025-10-23
DOI
https://doi.org/10.1038/s41597-025-05969-8
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Chromosome-level genome assembly of Turpan wonder gecko (Teratoscincus roborowskii) reveals olfactory candidate genes

Chao Wei, Xinyang Li, Jia Wang, Hongxiong Chang et al.
Scientific Data
Genomics and Phylogenetic Studies
article

Chromosome-level genome assembly of Turpan wonder gecko (Teratoscincus roborowskii) reveals olfactory candidate genes

Chao Wei, Xinyang Li, Jia Wang, Hongxiong Chang, Ping Yang
article en

Abstract

Teratoscincus roborowskii, an endemic species to China, is of particular interest due to its unique biological characteristics. It is a strictly nocturnal reptile that inhabits extremely harsh environmen. In this study, we generated the first chromosome level genome assembly of T. roborowskii using PacBio circular consensus sequencing (CCS) combined with Hi-C scaffolding. The genome assembly at the contig level was mounted onto chromosomes, with approximately 2,077.46 Mb of sequence allocated to 18 chromosomes, accounting for 99.92% of the total length. Among the sequences mapped to the chromosomes, approximately 2,070.96 Mb have determined order and orientation, making up 99.69% of the total length of the mapped sequences, with a contig N50 and scaffold N50 values of 117.38 Mb and 156.21 Mb respectively, and contains 21,341 predicted protein-coding genes, of which 99.62% were successfully annotated against public database. This high-quality genome not only fills a critical gap in genomic resources for this species, but also provides a valuable foundation for future study on its evolutionary history, gene functions and conservation biology.

Scientific DataVol. 12(1)
Xinjiang Agricultural University (CN), Xinjiang University (CN)
Openalex Percentile: Top 73%
Genomics and Phylogenetic Studies
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Chromosome-level genome assembly of Turpan wonder gecko (Teratoscincus roborowskii) reveals olfactory candidate genes — Chao Wei, Xinyang Li, et al. · Scientific Data (2025) | TGRS Research Map | TGRS