Selecting fitted models under epistemic uncertainty using a stochastic process on quantile functions

Fitting models to data is an important part of the practice of science. Advances in machine learning have made it possible to fit more-and more complex-models, but have also exacerbated a problem: when multiple models fit the data equally well, which one(s) should we pick? The answer depends entirely on the modelling goal. In the scientific context, the essential goal is replicability: if a model works well to describe one experiment, it should continue to do so when that experiment is replicated tomorrow, or in another laboratory. The selection criterion must therefore be robust to the variations inherent to the replication process. In this work we develop a nonparametric method for estimating uncertainty on a model's empirical risk when replications are non-stationary, thus ensuring that a model is only rejected when another is reproducibly better. We illustrate the method with two examples: one a more classical setting, where the models are structurally distinct, and a machine learning-inspired setting, where they differ only in the value of their parameters. We show how, in this context of replicability or "epistemic uncertainty", it compares favourably to existing model selection criteria, and has more satisfactory behaviour with large experimental datasets.

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Publication Details

Journal
Nature Communications
Published
2025-10-23
DOI
https://doi.org/10.1038/s41467-025-64658-7
Citations
2
Primary Topic
Gaussian Processes and Bayesian Inference
Type
article
Field-Weighted Citation Impact
4.96

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article

Selecting fitted models under epistemic uncertainty using a stochastic process on quantile functions

Alexandre René, André Longtin
2 citations
Nature Communications
Gaussian Processes and Bayesian Inference
4.96
article

Selecting fitted models under epistemic uncertainty using a stochastic process on quantile functions

Alexandre René, André Longtin
article en
2 citations

Abstract

Fitting models to data is an important part of the practice of science. Advances in machine learning have made it possible to fit more-and more complex-models, but have also exacerbated a problem: when multiple models fit the data equally well, which one(s) should we pick? The answer depends entirely on the modelling goal. In the scientific context, the essential goal is replicability: if a model works well to describe one experiment, it should continue to do so when that experiment is replicated tomorrow, or in another laboratory. The selection criterion must therefore be robust to the variations inherent to the replication process. In this work we develop a nonparametric method for estimating uncertainty on a model's empirical risk when replications are non-stationary, thus ensuring that a model is only rejected when another is reproducibly better. We illustrate the method with two examples: one a more classical setting, where the models are structurally distinct, and a machine learning-inspired setting, where they differ only in the value of their parameters. We show how, in this context of replicability or "epistemic uncertainty", it compares favourably to existing model selection criteria, and has more satisfactory behaviour with large experimental datasets.

Nature CommunicationsVol. 16(1)
University of Ottawa (CA), General Dynamics (Canada) (CA), RWTH Aachen University (DE)
Government of Ontario, European Commission, Bundesministerium für Bildung und Forschung, Natural Sciences and Engineering Research Council of Canada
Openalex Percentile: Top 4%
Gaussian Processes and Bayesian Inference
4.96
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Selecting fitted models under epistemic uncertainty using a stochastic process on quantile functions — Alexandre René, André Longtin · Nature Communications (2025) | TGRS Research Map | TGRS