A deep learning model leveraging semantic features fusion for DNase I hypersensitive sites identification in the human genome

This study presents that the model integrates semantic vector-based feature fusion representation, which effectively captures both local and global patterns with inherited spatio-temporal dependencies within complex DHSs sequences. The model's performance was validated both with and without semantic feature fusion, followed by quantitative and statistical analyses against individual models, significantly enhancing feature representation and classification performance. Source code and datasets are available at: https://github.com/malikmtahir/DNase/tree/main.

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Publication Details

Journal
Computer Methods and Programs in Biomedicine
Published
2025-10-23
DOI
https://doi.org/10.1016/j.cmpb.2025.109127
Primary Topic
Machine Learning in Bioinformatics
Type
article
Field-Weighted Citation Impact
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article

A deep learning model leveraging semantic features fusion for DNase I hypersensitive sites identification in the human genome

Fawaz Khaled Alarfaj, Gautam Srivastava, Muhammad Tahir
Computer Methods and Programs in Biomedicine
Machine Learning in Bioinformatics
article

A deep learning model leveraging semantic features fusion for DNase I hypersensitive sites identification in the human genome

Fawaz Khaled Alarfaj, Gautam Srivastava, Muhammad Tahir
article en

Abstract

This study presents that the model integrates semantic vector-based feature fusion representation, which effectively captures both local and global patterns with inherited spatio-temporal dependencies within complex DHSs sequences. The model's performance was validated both with and without semantic feature fusion, followed by quantitative and statistical analyses against individual models, significantly enhancing feature representation and classification performance. Source code and datasets are available at: https://github.com/malikmtahir/DNase/tree/main.

Computer Methods and Programs in BiomedicineVol. 273
Abdul Wali Khan University Mardan (PK), China Medical University (TW), University of Manitoba (CA), King Faisal University (SA), Chitkara University (IN)
Openalex Percentile: Top 73%
Machine Learning in Bioinformatics
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