Pantoea phosphatilytica sp. nov. and Pantoea phyllosphaerae sp. nov., two phosphate-solubilizing and siderophore-producing bacteria isolated from citrus phyllosphere

Two yellow-pigmented, Gram-stain-negative, aerobic, motile and rod-shaped bacterial strains, designated RHCKP32<sup>T</sup> and RRHST58<sup>T</sup>, were isolated from the citrus leaves in Renhua County, a famous planting area located in Guangdong Province, China. Phylogenomic analysis showed that they belonged to the genus <i>Pantoea</i>, and strain RHCKP32<sup>T</sup> was most closely related to <i>Pantoea deleyi</i> LMG 24200<sup>T</sup>, while strain RRHST58<sup>T</sup> showed the closest relationship to <i>Pantoea septica</i> LMG 5345<sup>T</sup>. The overall genomic relatedness analysis showed that strains RHCKP32<sup>T</sup> and RRHST58<sup>T</sup> shared 84.3‒94.6 and 89.5‒94.5% average nucleotide identity and 32.0‒58.0 and 38.5‒58.2% digital DNA-DNA hybridization with their closely related type strains, respectively, which were all below the suggested threshold values for novel species delimitation. They both took ubiquinone 8 (Q-8) as the predominant respiratory quinone and C<sub>16:0</sub>, C<sub>17:0</sub> cyclo, summed feature 2 (C<sub>14:0</sub> 3-OH and/or iso-C<sub>16:1</sub> I), summed feature 3 (C<sub>16:1</sub> <i> ω</i>7<i>c</i> and/or C<sub>16:1</sub> <i> ω</i>6<i>c</i>) and summed feature 8 (C<sub>18:1</sub> <i> ω</i>7<i>c</i> and/or C<sub>18:1</sub> <i> ω</i>6<i>c</i>) as their major fatty acids. The genomic DNA G+C contents of strains RHCKP32<sup>T</sup> and RRHST58<sup>T</sup> were 57.33 and 58.77 mol%, respectively. Based on the phenotypic, phylogenetic and chemotaxonomic analyses, they should be considered as two novel species of the genus <i>Pantoea</i>, for which the names <i>Pantoea phosphatilytica</i> sp. nov. and <i>Pantoea phyllosphaerae</i> sp. nov. are proposed with RHCKP32<sup>T</sup> (=GDMCC 1.2672<sup>T</sup>=JCM 34793<sup>T</sup>) and RRHST58<sup>T</sup> (=GDMCC 1.2673<sup>T</sup>=JCM 34797<sup>T</sup>) as the type strains, respectively. In addition, they showed the ability to solubilize inorganic phosphates and produce siderophores, for which the maximum soluble phosphorus concentrations could reach 510.03±7.11 and 506.47±3.08 mg l<sup>-1</sup> for strains RHCKP32<sup>T</sup> and RRHST58<sup>T</sup> after 5 days of inoculation in liquid National Botanical Research Institute's (NBRIP) medium, respectively, and the corresponding relative siderophore production was 21.25±2.23 and 10.20±0.15 percent siderophore unit after 2 days of inoculation in nutrient broth, implicating they might have potential application in promoting plant growth.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2025-10-22
DOI
https://doi.org/10.1099/ijsem.0.006942
Primary Topic
Genomics and Phylogenetic Studies
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article

Pantoea phosphatilytica sp. nov. and Pantoea phyllosphaerae sp. nov., two phosphate-solubilizing and siderophore-producing bacteria isolated from citrus phyllosphere

Haoxiang Luo, Honghui Zhu, Ming‐Rong Deng, Guang-Da Feng et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Pantoea phosphatilytica sp. nov. and Pantoea phyllosphaerae sp. nov., two phosphate-solubilizing and siderophore-producing bacteria isolated from citrus phyllosphere

Haoxiang Luo, Honghui Zhu, Ming‐Rong Deng, Guang-Da Feng, Honghong Dong, Jun Zhang, Song-Zhen Yang, Jiali Li
article en

Abstract

Two yellow-pigmented, Gram-stain-negative, aerobic, motile and rod-shaped bacterial strains, designated RHCKP32<sup>T</sup> and RRHST58<sup>T</sup>, were isolated from the citrus leaves in Renhua County, a famous planting area located in Guangdong Province, China. Phylogenomic analysis showed that they belonged to the genus <i>Pantoea</i>, and strain RHCKP32<sup>T</sup> was most closely related to <i>Pantoea deleyi</i> LMG 24200<sup>T</sup>, while strain RRHST58<sup>T</sup> showed the closest relationship to <i>Pantoea septica</i> LMG 5345<sup>T</sup>. The overall genomic relatedness analysis showed that strains RHCKP32<sup>T</sup> and RRHST58<sup>T</sup> shared 84.3‒94.6 and 89.5‒94.5% average nucleotide identity and 32.0‒58.0 and 38.5‒58.2% digital DNA-DNA hybridization with their closely related type strains, respectively, which were all below the suggested threshold values for novel species delimitation. They both took ubiquinone 8 (Q-8) as the predominant respiratory quinone and C<sub>16:0</sub>, C<sub>17:0</sub> cyclo, summed feature 2 (C<sub>14:0</sub> 3-OH and/or iso-C<sub>16:1</sub> I), summed feature 3 (C<sub>16:1</sub> <i> ω</i>7<i>c</i> and/or C<sub>16:1</sub> <i> ω</i>6<i>c</i>) and summed feature 8 (C<sub>18:1</sub> <i> ω</i>7<i>c</i> and/or C<sub>18:1</sub> <i> ω</i>6<i>c</i>) as their major fatty acids. The genomic DNA G+C contents of strains RHCKP32<sup>T</sup> and RRHST58<sup>T</sup> were 57.33 and 58.77 mol%, respectively. Based on the phenotypic, phylogenetic and chemotaxonomic analyses, they should be considered as two novel species of the genus <i>Pantoea</i>, for which the names <i>Pantoea phosphatilytica</i> sp. nov. and <i>Pantoea phyllosphaerae</i> sp. nov. are proposed with RHCKP32<sup>T</sup> (=GDMCC 1.2672<sup>T</sup>=JCM 34793<sup>T</sup>) and RRHST58<sup>T</sup> (=GDMCC 1.2673<sup>T</sup>=JCM 34797<sup>T</sup>) as the type strains, respectively. In addition, they showed the ability to solubilize inorganic phosphates and produce siderophores, for which the maximum soluble phosphorus concentrations could reach 510.03±7.11 and 506.47±3.08 mg l<sup>-1</sup> for strains RHCKP32<sup>T</sup> and RRHST58<sup>T</sup> after 5 days of inoculation in liquid National Botanical Research Institute's (NBRIP) medium, respectively, and the corresponding relative siderophore production was 21.25±2.23 and 10.20±0.15 percent siderophore unit after 2 days of inoculation in nutrient broth, implicating they might have potential application in promoting plant growth.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 75(10)
South China Agricultural University (CN), Guangdong Academy of Sciences (CN), Institute of Microbiology (CN)
Openalex Percentile: Top 73%
Genomics and Phylogenetic Studies
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