PseudotimeDE-fast: fast testing of differential gene expression along cell pseudotime
PseudotimeDE-fast is implemented in R with Rcpp acceleration and released under the MIT license. The source code is available at: https://github.com/dsong-lab/PseudotimeDE.
Authors
- Dongyuan Song (ORCID: https://orcid.org/0000-0003-1114-1215)
- Lucy Xia (ORCID: https://orcid.org/0000-0002-8805-6660)
- Jingyi Jessica Li (ORCID: https://orcid.org/0000-0002-9288-5648)
- Yuheng Lai
Institutions
- Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa (ZA)
- University of Wisconsin–Madison (US)
- University of California, Los Angeles (US)
- Hong Kong University of Science and Technology (HK)
- Fred Hutch Cancer Center (US)
- UConn Health (US)
- University of Hong Kong (HK)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-10-16
- DOI
- https://doi.org/10.1093/bioinformatics/btaf573
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Science Foundation
- W. M. Keck Foundation
- National Institutes of Health
- National Institute of General Medical Sciences
- David Geffen School of Medicine, University of California, Los Angeles