Unraveling the Disruptive Mechanism of Local Anesthetics on Raft-Like Ordered Membranes: Simulation Studies

The membrane perturbation of local anesthetics (LAs) with distinct steric differences─dibucaine (Dib), tetracaine (Tet), and lidocaine (Lid)─as well as their behavior in different regions of the raft-like ordered (Lo) membrane, were investigated using umbrella sampling molecular dynamics (MD) simulations. Both uncharged (-u) and protonated (-p) forms were considered. Our findings from potential mean force (PMF), <i>z</i>-axis diffusion, and area per lipid (APL) confirmed that Dib-u preferentially located at the hydrophobic core, whereas Lid-u shows no specific localization preference and exhibits rapid diffusion across the Lo membrane. The steric effect drives the distinct translocation behavior of LAs-u but has no significant impact on LAs-p. These two factors─bulky properties and high affinity for the hydrophobic core, as observed in Dib-u─contribute to the membrane disruption. This observation is evidenced by the significantly lower PMF profile at the deep hydrophobic core, the greatest lipid packing disorder, and high steric bulk, which is in reasonable agreement with experimental observations. Three-dimensional reference interaction-site model (3D-RISM) analysis further supports the amphiphilic nature of LAs-u and an increase in hydrophilicity of LAs-p. This difference is a key factor modulating the action of LAs-u and LAs-p forms in different membrane environments. Our findings on the distinct behavior governing the Lo membrane translocation of LAs-u are influenced by preferred localization within the Lo membrane and the steric effect. These insights offer valuable insights for the anesthetic design and membrane-based biosensor development.

Authors

Institutions

Publication Details

Journal
Journal of Chemical Information and Modeling
Published
2025-10-21
DOI
https://doi.org/10.1021/acs.jcim.5c01784
Primary Topic
Lipid Membrane Structure and Behavior
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Unraveling the Disruptive Mechanism of Local Anesthetics on Raft-Like Ordered Membranes: Simulation Studies

Nobuaki Matsumori, Masanao Kinoshita, Norio Yoshida, Kodai Kanemaru et al.
Journal of Chemical Information and Modeling
Lipid Membrane Structure and Behavior
article

Unraveling the Disruptive Mechanism of Local Anesthetics on Raft-Like Ordered Membranes: Simulation Studies

Nobuaki Matsumori, Masanao Kinoshita, Norio Yoshida, Kodai Kanemaru, Sirin Sittiwanichai
article en

Abstract

The membrane perturbation of local anesthetics (LAs) with distinct steric differences─dibucaine (Dib), tetracaine (Tet), and lidocaine (Lid)─as well as their behavior in different regions of the raft-like ordered (Lo) membrane, were investigated using umbrella sampling molecular dynamics (MD) simulations. Both uncharged (-u) and protonated (-p) forms were considered. Our findings from potential mean force (PMF), <i>z</i>-axis diffusion, and area per lipid (APL) confirmed that Dib-u preferentially located at the hydrophobic core, whereas Lid-u shows no specific localization preference and exhibits rapid diffusion across the Lo membrane. The steric effect drives the distinct translocation behavior of LAs-u but has no significant impact on LAs-p. These two factors─bulky properties and high affinity for the hydrophobic core, as observed in Dib-u─contribute to the membrane disruption. This observation is evidenced by the significantly lower PMF profile at the deep hydrophobic core, the greatest lipid packing disorder, and high steric bulk, which is in reasonable agreement with experimental observations. Three-dimensional reference interaction-site model (3D-RISM) analysis further supports the amphiphilic nature of LAs-u and an increase in hydrophilicity of LAs-p. This difference is a key factor modulating the action of LAs-u and LAs-p forms in different membrane environments. Our findings on the distinct behavior governing the Lo membrane translocation of LAs-u are influenced by preferred localization within the Lo membrane and the steric effect. These insights offer valuable insights for the anesthetic design and membrane-based biosensor development.

Journal of Chemical Information and ModelingVol. 66(1)
Kyushu University (JP), Gunma University (JP), Kyoto University (JP), Nagoya University (JP)
Openalex Percentile: Top 73%
Lipid Membrane Structure and Behavior
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.