A Bayesian approach towards atomically-precise localization in fluorescence microscopy

Super-resolution microscopy has revolutionized the imaging of complex physical and biological systems by surpassing the Abbe diffraction limit. Recent advancements, particularly in single-molecule localization microscopy, have pushed localization below nanometer precision, by applying prior knowledge of correlated fluorescence emission from single emitters. However, achieving a refinement from 1 nm to 1 Ångström demands a hundred-fold increase in collected photon signal. This quadratic resource scaling imposes a fundamental barrier in single-molecule localization microscopy, where the intense photon collection is challenged by photo-bleaching, prolonged integration times, and inherent practical constraints. Here, we break this limit by harnessing the periodic nature of the atomic lattice structure. Applying this discrete grid imaging technique (DIGIT) in a quantum emitter system, we observe an exponential collapse of localization uncertainty once surpassing the host crystal's atomic lattice constant. We further applied DIGIT to a large-scale quantum emitter array, enabling parallel positioning of each emitter through wide-field imaging. Collectively, these advancements establish DIGIT as a competitive tool for achieving unprecedented, precise measurements, ultimately paving the way to direct optical resolution of crystal and atomic features within quantum and biological systems.

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Publication Details

Journal
Nature Communications
Published
2025-10-21
DOI
https://doi.org/10.1038/s41467-025-64083-w
Citations
2
Primary Topic
Advanced Fluorescence Microscopy Techniques
Type
article
Field-Weighted Citation Impact
3.27

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article

A Bayesian approach towards atomically-precise localization in fluorescence microscopy

Yong Hu, Kevin C. Chen, Qing Gu, Hanfeng Wang et al.
2 citations
Nature Communications
Advanced Fluorescence Microscopy Techniques
3.27
article

A Bayesian approach towards atomically-precise localization in fluorescence microscopy

Yong Hu, Kevin C. Chen, Qing Gu, Hanfeng Wang, Dirk Englund, Yuqin Duan, Matthew E. Trusheim
article en
2 citations

Abstract

Super-resolution microscopy has revolutionized the imaging of complex physical and biological systems by surpassing the Abbe diffraction limit. Recent advancements, particularly in single-molecule localization microscopy, have pushed localization below nanometer precision, by applying prior knowledge of correlated fluorescence emission from single emitters. However, achieving a refinement from 1 nm to 1 Ångström demands a hundred-fold increase in collected photon signal. This quadratic resource scaling imposes a fundamental barrier in single-molecule localization microscopy, where the intense photon collection is challenged by photo-bleaching, prolonged integration times, and inherent practical constraints. Here, we break this limit by harnessing the periodic nature of the atomic lattice structure. Applying this discrete grid imaging technique (DIGIT) in a quantum emitter system, we observe an exponential collapse of localization uncertainty once surpassing the host crystal's atomic lattice constant. We further applied DIGIT to a large-scale quantum emitter array, enabling parallel positioning of each emitter through wide-field imaging. Collectively, these advancements establish DIGIT as a competitive tool for achieving unprecedented, precise measurements, ultimately paving the way to direct optical resolution of crystal and atomic features within quantum and biological systems.

Nature CommunicationsVol. 16(1)
Vassar College (US), DEVCOM Army Research Laboratory (US), IIT@MIT (US)
National Science Foundation, Massachusetts Institute of Technology, Division of Materials Research, Moonshot Research and Development Program
Openalex Percentile: Top 7%
Advanced Fluorescence Microscopy Techniques
3.27
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