Conformational analysis of the salts of <i>N</i> -[(2,3-dimethylphenoxy)alkyl]aminoalkanol derivatives

Four new crystal structures of the salts of N-[(2,3-dimethylphenoxy)alkyl]aminoalkanol derivatives with anticonvulsant activity are reported. Bis{D,L-trans-N-[(2,3-dimethylphenoxy)ethyl]-1-hydroxycyclohexan-2-aminium} succinate, 2C<sub>16</sub>H<sub>26</sub>NO<sub>2</sub><sup>+</sup>·C<sub>4</sub>H<sub>4</sub>O<sub>4</sub><sup>2-</sup>, 1, and its polymorph 1p, crystallize in the monoclinic space group P2<sub>1</sub>/n, 1 with two cations and one anion, and 1p with four cations and two anions in the asymmetric unit. The other two salts, D,L-trans-N-[(2,3-dimethylphenoxy)ethyl]-1-hydroxycyclohexan-2-aminium 6-carboxypyridine-2-carboxylate, C<sub>16</sub>H<sub>25</sub>NO<sub>2</sub><sup>+</sup>·C<sub>7</sub>H<sub>4</sub>O<sub>4</sub><sup>-</sup>, 2, and N-[(2,3-dimethylphenoxy)propyl]-3-hydroxypiperidinium pyridine-2-carboxylate, C<sub>16</sub>H<sub>26</sub>NO<sub>2</sub><sup>+</sup>·C<sub>6</sub>H<sub>4</sub>O<sub>2</sub><sup>-</sup>, 3, crystallize in the monoclinic space group P2<sub>1</sub>/c, with one cation and one anion in each asymmetric unit. The geometry of the created polymorphs indicates the main differences in the conformation of the linker between the two rings. The arrangement of the ether O atom and the N atom shows an unusual antiperiplanar conformation for the cations of 1p. The crystal packing of all four salts is dominated by charge-assisted hydrogen bonding between the protonated N atom and the carboxylate group of the corresponding acid. Structural studies have been enriched by quantum chemical calculations.

Authors

Institutions

Publication Details

Journal
Acta Crystallographica Section C Structural Chemistry
Published
2025-10-12
DOI
https://doi.org/10.1107/s2053229625008745
Primary Topic
Crystal structures of chemical compounds
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Conformational analysis of the salts of N -[(2,3-dimethylphenoxy)alkyl]aminoalkanol derivatives

Krzysztof Zborowski, Agnieszka Kania, Ewa Żesławska, Wojciech Nitek et al.
Acta Crystallographica Section C Structural Chemistry
Crystal structures of chemical compounds
article

Conformational analysis of the salts of N -[(2,3-dimethylphenoxy)alkyl]aminoalkanol derivatives

Krzysztof Zborowski, Agnieszka Kania, Ewa Żesławska, Wojciech Nitek, Henryk Marona, Anna M. Waszkielewicz
article en

Abstract

Four new crystal structures of the salts of N-[(2,3-dimethylphenoxy)alkyl]aminoalkanol derivatives with anticonvulsant activity are reported. Bis{D,L-trans-N-[(2,3-dimethylphenoxy)ethyl]-1-hydroxycyclohexan-2-aminium} succinate, 2C<sub>16</sub>H<sub>26</sub>NO<sub>2</sub><sup>+</sup>·C<sub>4</sub>H<sub>4</sub>O<sub>4</sub><sup>2-</sup>, 1, and its polymorph 1p, crystallize in the monoclinic space group P2<sub>1</sub>/n, 1 with two cations and one anion, and 1p with four cations and two anions in the asymmetric unit. The other two salts, D,L-trans-N-[(2,3-dimethylphenoxy)ethyl]-1-hydroxycyclohexan-2-aminium 6-carboxypyridine-2-carboxylate, C<sub>16</sub>H<sub>25</sub>NO<sub>2</sub><sup>+</sup>·C<sub>7</sub>H<sub>4</sub>O<sub>4</sub><sup>-</sup>, 2, and N-[(2,3-dimethylphenoxy)propyl]-3-hydroxypiperidinium pyridine-2-carboxylate, C<sub>16</sub>H<sub>26</sub>NO<sub>2</sub><sup>+</sup>·C<sub>6</sub>H<sub>4</sub>O<sub>2</sub><sup>-</sup>, 3, crystallize in the monoclinic space group P2<sub>1</sub>/c, with one cation and one anion in each asymmetric unit. The geometry of the created polymorphs indicates the main differences in the conformation of the linker between the two rings. The arrangement of the ether O atom and the N atom shows an unusual antiperiplanar conformation for the cations of 1p. The crystal packing of all four salts is dominated by charge-assisted hydrogen bonding between the protonated N atom and the carboxylate group of the corresponding acid. Structural studies have been enriched by quantum chemical calculations.

Acta Crystallographica Section C Structural ChemistryVol. 81(11)
Jagiellonian University (PL), Uniwersytet Komisji Edukacji Narodowej w Krakowie (PL), Andrzej Frycz Modrzewski Krakow University (PL)
Openalex Percentile: Top 75%
Crystal structures of chemical compounds
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.