Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly

The recruitment of Heterochromatin Protein 1 (HP1) partners is essential for heterochromatin assembly and function, yet our knowledge regarding their organization in heterochromatin remains limited. Here, we show that interactors engage the DrosophilaHP1 (HP1a) dimer through a degenerate and expanded form of the previously identified PxVxL motif, which we now term HP1a Access Codes (HACs). These HACs reside in disordered regions, possess high conservation among Drosophilahomologs, and contain alternating hydrophobic residues nested in a cluster of positively charged amino acids. These findings and molecular dynamics simulations identify key electrostatic interactions that modulate HP1a-binding strength and provide a dramatically improved HP1a-binding consensus motif that can reveal protein partners and the molecular grammar involved in heterochromatin assembly. We propose HP1a acts as a scaffold for other heterochromatin components containing HAC motifs, which in turn regulate the function and higher order structure of the heterochromatin compartment.

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Publication Details

Journal
Nucleic Acids Research
Published
2025-10-14
DOI
https://doi.org/10.1093/nar/gkaf976
Citations
2
Primary Topic
Genomics and Chromatin Dynamics
Type
article
Field-Weighted Citation Impact
1.61

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article

Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly

Gary H. Karpen, Collin Hickmann, Lucy D. Brennan, Serafin U. Colmenares et al.
2 citations
Nucleic Acids Research
Genomics and Chromatin Dynamics
1.61
article

Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly

Gary H. Karpen, Collin Hickmann, Lucy D. Brennan, Serafin U. Colmenares, Mohammad R. K. Mofrad, Shingo Tsukamoto, Mohammad Khavani
article en
2 citations

Abstract

The recruitment of Heterochromatin Protein 1 (HP1) partners is essential for heterochromatin assembly and function, yet our knowledge regarding their organization in heterochromatin remains limited. Here, we show that interactors engage the DrosophilaHP1 (HP1a) dimer through a degenerate and expanded form of the previously identified PxVxL motif, which we now term HP1a Access Codes (HACs). These HACs reside in disordered regions, possess high conservation among Drosophilahomologs, and contain alternating hydrophobic residues nested in a cluster of positively charged amino acids. These findings and molecular dynamics simulations identify key electrostatic interactions that modulate HP1a-binding strength and provide a dramatically improved HP1a-binding consensus motif that can reveal protein partners and the molecular grammar involved in heterochromatin assembly. We propose HP1a acts as a scaffold for other heterochromatin components containing HAC motifs, which in turn regulate the function and higher order structure of the heterochromatin compartment.

Nucleic Acids ResearchVol. 53(19)
Lawrence Berkeley National Laboratory (US), University of California, Berkeley (US)
National Science Foundation, Japan Student Services Organization, National Institutes of Health, Office of Advanced Cyberinfrastructure
Openalex Percentile: Top 14%
Genomics and Chromatin Dynamics
1.61
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Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly — Gary H. Karpen, Collin Hickmann, et al. · Nucleic Acids Research (2025) | TGRS Research Map | TGRS