Escaping from Flatland: 3D Carborane-Based Bioisosteres of Erlotinib as Potential Anticancer Agents

Phenyl rings are present in nearly 45% of approved small-molecule drugs; however, their flat, aromatic nature can lead to poor solubility, metabolic instability, and limited target selectivity. Carboranes, as three-dimensional boron-rich bioisosteres, may offer a promising alternative to address these limitations. Here, we report the design, synthesis, and biological characterization of novel carborane-based analogs of erlotinib, exploring 3D bioisosterism to enhance anticancer activity. All the carborane-based analogs displayed better <i>in vitro</i> biological behavior than the parent compound, with the <i>para</i>-derivatives (<b>13</b>) and (<b>17</b>) emerging as promising leads, showing 2.5 to >12-fold greater cytotoxicity than erlotinib and up to ∼7-fold selectivities for glioblastoma over astrocytes. Compound (<b>17</b>) moderately inhibited both wild-type EGFR (IC<sub>5</sub> <sub>0</sub> = 9.23 μM) and the drug-resistant EGFR<sub>T790M</sub> mutant (IC<sub>5</sub> <sub>0</sub> = 7.19 μM). Molecular docking and dynamics simulations predicted binding within the ATP catalytic site, displaying a hinge-binding mode characteristic of EGFR inhibitors. Mechanistic studies revealed apoptosis as the predominant cell death pathway. <i>In vivo</i>, compound (<b>17</b>) showed excellent acute oral safety (LD<sub>5</sub> <sub>0</sub> > 2000 mg/kg in mice) with no alterations in biochemical blood parameters. Ames testing indicated no mutagenic potential. <i>In silico</i> ADMET profiling predicted high intestinal absorption, absence of P-gp interaction, weak hERG inhibition, and no carcinogenicity, with only compounds (<b>16</b>) and (<b>17</b>) predicted to cross the blood-brain barrier. Chemical stability assays demonstrated that all compounds, except (<b>18</b>), were stable for 24 h under physiologically relevant pH conditions (2.0, 7.0, and 8.6). Overall, these findings position compound (<b>17</b>) as a promising lead for glioblastoma tumors. Despite modest biochemical potency, its strong cellular efficacy suggests additional mechanisms of action beyond direct EGFR inhibition. Future efforts will focus on kinome-wide profiling and transcriptomic analyses to elucidate its broader target spectrum and optimize this scaffold for clinical translation.

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Publication Details

Journal
ACS Omega
Published
2025-10-14
DOI
https://doi.org/10.1021/acsomega.5c07982
Citations
3
Primary Topic
Boron Compounds in Chemistry
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article
Field-Weighted Citation Impact
4.08
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article

Escaping from Flatland: 3D Carborane-Based Bioisosteres of Erlotinib as Potential Anticancer Agents

Belén Dávila, Marcos Couto, Oscar E. Piro, Gustavo A. Echeverría et al.
3 citations
ACS Omega
Boron Compounds in Chemistry
4.08
article

Escaping from Flatland: 3D Carborane-Based Bioisosteres of Erlotinib as Potential Anticancer Agents

Belén Dávila, Marcos Couto, Oscar E. Piro, Gustavo A. Echeverría, Jenner Bonanata, Pablo Vignolo, Nicole Lecot, María Fernanda García, Hugo Cerecetto, Ignacio González
article en
3 citations

Abstract

Phenyl rings are present in nearly 45% of approved small-molecule drugs; however, their flat, aromatic nature can lead to poor solubility, metabolic instability, and limited target selectivity. Carboranes, as three-dimensional boron-rich bioisosteres, may offer a promising alternative to address these limitations. Here, we report the design, synthesis, and biological characterization of novel carborane-based analogs of erlotinib, exploring 3D bioisosterism to enhance anticancer activity. All the carborane-based analogs displayed better <i>in vitro</i> biological behavior than the parent compound, with the <i>para</i>-derivatives (<b>13</b>) and (<b>17</b>) emerging as promising leads, showing 2.5 to >12-fold greater cytotoxicity than erlotinib and up to ∼7-fold selectivities for glioblastoma over astrocytes. Compound (<b>17</b>) moderately inhibited both wild-type EGFR (IC<sub>5</sub> <sub>0</sub> = 9.23 μM) and the drug-resistant EGFR<sub>T790M</sub> mutant (IC<sub>5</sub> <sub>0</sub> = 7.19 μM). Molecular docking and dynamics simulations predicted binding within the ATP catalytic site, displaying a hinge-binding mode characteristic of EGFR inhibitors. Mechanistic studies revealed apoptosis as the predominant cell death pathway. <i>In vivo</i>, compound (<b>17</b>) showed excellent acute oral safety (LD<sub>5</sub> <sub>0</sub> > 2000 mg/kg in mice) with no alterations in biochemical blood parameters. Ames testing indicated no mutagenic potential. <i>In silico</i> ADMET profiling predicted high intestinal absorption, absence of P-gp interaction, weak hERG inhibition, and no carcinogenicity, with only compounds (<b>16</b>) and (<b>17</b>) predicted to cross the blood-brain barrier. Chemical stability assays demonstrated that all compounds, except (<b>18</b>), were stable for 24 h under physiologically relevant pH conditions (2.0, 7.0, and 8.6). Overall, these findings position compound (<b>17</b>) as a promising lead for glioblastoma tumors. Despite modest biochemical potency, its strong cellular efficacy suggests additional mechanisms of action beyond direct EGFR inhibition. Future efforts will focus on kinome-wide profiling and transcriptomic analyses to elucidate its broader target spectrum and optimize this scaffold for clinical translation.

ACS OmegaVol. 10(42)
Consejo Nacional de Investigaciones Científicas y Técnicas (AR), Universidad de la República de Uruguay (UY), University of Applied and Environmental Sciences (CO), Instituto de Investigaciones en Ciencias de la Salud (AR), Instituto de Física La Plata (AR), Instituto Nacional de Salud (PE), Centro de Investigaciones Cardiovasculares (AR), Instituto de Química Orgánica General (ES), Universidad La República (CL), Universidad Nacional de La Plata (AR)
Openalex Percentile: Top 5%
Boron Compounds in Chemistry
4.08
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