Efficient Molecular Crystal Structure Prediction and Stability Assessment with AIMNet2 Neural Network Potentials

Identifying thermodynamically stable crystal structures remains a key challenge in materials chemistry. Computational crystal structure prediction (CSP) workflows typically rank candidate structures by lattice energy to assess relative stability. Approaches using self-consistent first-principles calculations become prohibitively expensive, especially when millions of energy evaluations are required for complex molecular systems with many atoms per unit cell. Here, we provide a detailed analysis of our methodology and results from the seventh blind test of crystal structure prediction organized by the Cambridge Crystallographic Data Centre (CCDC). We present an approach that significantly accelerates CSP by training target-specific machine-learned interatomic potentials (MLIPs). AIMNet2 MLIPs are trained on density functional theory (DFT) calculations of molecular clusters, herein referred to as <i>n</i>-mers. We demonstrate that potentials trained on gas phase dispersion-corrected DFT reference data of <i>n</i>-mers successfully extend to crystalline environments, accurately characterizing the CSP landscape and correctly ranking structures by relative stability. Our methodology effectively captures the underlying physics of thermodynamic crystal stability using only molecular cluster data, avoiding the need for expensive periodic calculations. The performance of target-specific AIMNet2 interatomic potentials is illustrated across diverse chemical systems relevant to pharmaceutical, optoelectronic, and agrochemical applications, demonstrating their promise as efficient alternatives to full DFT calculations for routine CSP tasks.

Authors

Institutions

Publication Details

Journal
Crystal Growth & Design
Published
2025-10-14
DOI
https://doi.org/10.1021/acs.cgd.5c01001
Citations
3
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
4.51
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Efficient Molecular Crystal Structure Prediction and Stability Assessment with AIMNet2 Neural Network Potentials

Olexandr Isayev, Kehan Tang, Dylan M. Anstine, Rithwik Tom et al.
3 citations
Crystal Growth & Design
Computational Drug Discovery Methods
4.51
article

Efficient Molecular Crystal Structure Prediction and Stability Assessment with AIMNet2 Neural Network Potentials

Olexandr Isayev, Kehan Tang, Dylan M. Anstine, Rithwik Tom, Noa Marom, Dana O’Connor, R.I. Zubatyuk, Deng Wen-da, Yi Yang, Kamal Singh Nayal
article en
3 citations

Abstract

Identifying thermodynamically stable crystal structures remains a key challenge in materials chemistry. Computational crystal structure prediction (CSP) workflows typically rank candidate structures by lattice energy to assess relative stability. Approaches using self-consistent first-principles calculations become prohibitively expensive, especially when millions of energy evaluations are required for complex molecular systems with many atoms per unit cell. Here, we provide a detailed analysis of our methodology and results from the seventh blind test of crystal structure prediction organized by the Cambridge Crystallographic Data Centre (CCDC). We present an approach that significantly accelerates CSP by training target-specific machine-learned interatomic potentials (MLIPs). AIMNet2 MLIPs are trained on density functional theory (DFT) calculations of molecular clusters, herein referred to as <i>n</i>-mers. We demonstrate that potentials trained on gas phase dispersion-corrected DFT reference data of <i>n</i>-mers successfully extend to crystalline environments, accurately characterizing the CSP landscape and correctly ranking structures by relative stability. Our methodology effectively captures the underlying physics of thermodynamic crystal stability using only molecular cluster data, avoiding the need for expensive periodic calculations. The performance of target-specific AIMNet2 interatomic potentials is illustrated across diverse chemical systems relevant to pharmaceutical, optoelectronic, and agrochemical applications, demonstrating their promise as efficient alternatives to full DFT calculations for routine CSP tasks.

Crystal Growth & DesignVol. 25(21)
Carnegie Mellon University (US)
Openalex Percentile: Top 5%
Computational Drug Discovery Methods
4.51
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.