Relative cooperativity in neutral and charged molecular clusters using QM/MM calculations

QM/MM methods have been used to study electronic structure properties and chemical reactivity in complex molecular systems where direct electronic structure calculations are not feasible. In our previous work, we showed that non-polarizable force fields, by design, describe intermolecular interactions through pairwise interactions, overlooking many-body interactions involving three or more particles. In contrast, polarizable force fields account partially for many-body effects through polarization, but still handle van der Waals and permanent electrostatic interactions pairwise. We showed that despite those limitations, polarizable and non-polarizable force fields can reproduce relative cooperativity achieved using density functional theory due to error compensation mechanisms. In this contribution, we assess the performance of QM/MM methods in reproducing these phenomena. Our study highlights the significance of the QM region size and force field choice in QM/MM calculations, emphasizing the importance of parameter validation to obtain accurate interaction energy predictions.

Authors

Institutions

Publication Details

Journal
UNC Libraries
Published
2025-04-02
DOI
https://doi.org/10.17615/x2kv-6d56
Primary Topic
Advanced Chemical Physics Studies
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Relative cooperativity in neutral and charged molecular clusters using QM/MM calculations

Jorge Nochebuena, G. Andrés Cisneros, Shubin Liu
UNC Libraries
Advanced Chemical Physics Studies
article

Relative cooperativity in neutral and charged molecular clusters using QM/MM calculations

Jorge Nochebuena, G. Andrés Cisneros, Shubin Liu
article en

Abstract

QM/MM methods have been used to study electronic structure properties and chemical reactivity in complex molecular systems where direct electronic structure calculations are not feasible. In our previous work, we showed that non-polarizable force fields, by design, describe intermolecular interactions through pairwise interactions, overlooking many-body interactions involving three or more particles. In contrast, polarizable force fields account partially for many-body effects through polarization, but still handle van der Waals and permanent electrostatic interactions pairwise. We showed that despite those limitations, polarizable and non-polarizable force fields can reproduce relative cooperativity achieved using density functional theory due to error compensation mechanisms. In this contribution, we assess the performance of QM/MM methods in reproducing these phenomena. Our study highlights the significance of the QM region size and force field choice in QM/MM calculations, emphasizing the importance of parameter validation to obtain accurate interaction energy predictions.

UNC Libraries
University of North Carolina at Chapel Hill (US)
National Science Foundation, University of North Texas, National Institutes of Health, Division of Chemistry
Openalex Percentile: Top 77%
Advanced Chemical Physics Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Relative cooperativity in neutral and charged molecular clusters using QM/MM calculations — Jorge Nochebuena, G. Andrés Cisneros, et al. · UNC Libraries (2025) | TGRS Research Map | TGRS