Computed ECD spectral data for over 10,000 chiral organic small molecules

Determining the absolute configuration of chiral molecules is of fundamental importance in the fields of natural products chemistry, asymmetric catalysis, and pharmaceutical development. A widely adopted approach involves the comparison of experimental and theoretical electronic circular dichroism (ECD) spectra, which has proven to be a reliable method for absolute configuration assignment. However, the generation of theoretical ECD spectra via time-dependent density functional theory (TD-DFT) remains the rate-limiting step in this workflow, making its acceleration both essential and challenging. Although recent advances in deep learning offer promising strategies for establishing structure-spectrum relationships and expediting theoretical spectrum prediction, the lack of standardized and comprehensive ECD spectral datasets continues to hinder progress. This study presents the Chiral Molecular Circular Dichroism Spectral (CMCDS) dataset, a systematically structural benchmark dataset that addresses the fragmentation of existing ECD data. Characterized by high standardization, scalability, and broad molecular diversity, CMCDS facilitates deep learning applications in ECD analysis and fosters data-driven discovery of chiral molecules.

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Publication Details

Journal
Scientific Data
Published
2025-10-14
DOI
https://doi.org/10.1038/s41597-025-05929-2
Primary Topic
Molecular spectroscopy and chirality
Type
article
Field-Weighted Citation Impact
0.00

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article

Computed ECD spectral data for over 10,000 chiral organic small molecules

Chengchun Liu, Fanyang Mo, Xiaoyu Cao, Zhihao Li et al.
Scientific Data
Molecular spectroscopy and chirality
article

Computed ECD spectral data for over 10,000 chiral organic small molecules

Chengchun Liu, Fanyang Mo, Xiaoyu Cao, Zhihao Li, Hui Zhang, Xinchang Wang, Xin Xu, Liulin Yang, Da Long
article en

Abstract

Determining the absolute configuration of chiral molecules is of fundamental importance in the fields of natural products chemistry, asymmetric catalysis, and pharmaceutical development. A widely adopted approach involves the comparison of experimental and theoretical electronic circular dichroism (ECD) spectra, which has proven to be a reliable method for absolute configuration assignment. However, the generation of theoretical ECD spectra via time-dependent density functional theory (TD-DFT) remains the rate-limiting step in this workflow, making its acceleration both essential and challenging. Although recent advances in deep learning offer promising strategies for establishing structure-spectrum relationships and expediting theoretical spectrum prediction, the lack of standardized and comprehensive ECD spectral datasets continues to hinder progress. This study presents the Chiral Molecular Circular Dichroism Spectral (CMCDS) dataset, a systematically structural benchmark dataset that addresses the fragmentation of existing ECD data. Characterized by high standardization, scalability, and broad molecular diversity, CMCDS facilitates deep learning applications in ECD analysis and fosters data-driven discovery of chiral molecules.

Scientific DataVol. 12(1)
Shenzhen University (CN), Xiamen University (CN), Peking University (CN), Peking University Shenzhen Hospital (CN), Collaborative Innovation Center of Chemistry for Energy Materials (CN), South China University of Technology (CN)
National Natural Science Foundation of China, Peking University, Xiamen University, Fundamental Research Funds for the Central Universities
Openalex Percentile: Top 73%
Molecular spectroscopy and chirality
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