Network Topology Similarities Across Cancer Types: Identifying Central Protein Hubs for Drug Discovery

A molecular-level understanding of cancer is essential for the development of effective therapies. Constructing protein-protein interaction (PPI) networks offers a valuable approach to identifying dysregulated driver genes and potential therapeutic targets. In this study, we modeled cancer PPI networks as metric spaces and applied mathematical and computational algorithms to analyze their structural and functional properties. Our findings reveal that these networks share a conserved architecture across different cancer types, with central zones enriched in essential proteins and critical regulatory pathways. Notably, zones 1 and 2 of the cancer PPI networks are uniquely enriched in specific pathways, underscoring their importance in the progression of cancer. These results highlight the potential of metric-based analysis of PPI networks to uncover key molecular targets and accelerate drug discovery in oncology.

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Publication Details

Journal
OBM Genetics
Published
2025-10-13
DOI
https://doi.org/10.21926/obm.genet.2504312
Primary Topic
Bioinformatics and Genomic Networks
Type
article
Field-Weighted Citation Impact
0.00

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article

Network Topology Similarities Across Cancer Types: Identifying Central Protein Hubs for Drug Discovery

Emad Fadhal
OBM Genetics
Bioinformatics and Genomic Networks
article

Network Topology Similarities Across Cancer Types: Identifying Central Protein Hubs for Drug Discovery

Emad Fadhal
article en

Abstract

A molecular-level understanding of cancer is essential for the development of effective therapies. Constructing protein-protein interaction (PPI) networks offers a valuable approach to identifying dysregulated driver genes and potential therapeutic targets. In this study, we modeled cancer PPI networks as metric spaces and applied mathematical and computational algorithms to analyze their structural and functional properties. Our findings reveal that these networks share a conserved architecture across different cancer types, with central zones enriched in essential proteins and critical regulatory pathways. Notably, zones 1 and 2 of the cancer PPI networks are uniquely enriched in specific pathways, underscoring their importance in the progression of cancer. These results highlight the potential of metric-based analysis of PPI networks to uncover key molecular targets and accelerate drug discovery in oncology.

OBM GeneticsVol. 09(04)
University of the Western Cape
Openalex Percentile: Top 74%
Bioinformatics and Genomic Networks
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Network Topology Similarities Across Cancer Types: Identifying Central Protein Hubs for Drug Discovery — Emad Fadhal · OBM Genetics (2025) | TGRS Research Map | TGRS