Deep‐Learning‐Assisted SICM for Enhanced Real‐Time Imaging of Nanoscale Biological Dynamics

Scanning Ion Conductance Microscopy (SICM) provides high-resolution, nanoscale imaging of living cells, but it is generally limited by a slow scan rate, making it challenging to capture dynamic processes in real time. To tackle this challenge, an integrated data acquisition and computational framework is proposed that improves the temporal resolution of SICM by selectively skipping certain scan lines. A partial convolutional neural network (Partial-CNN) model is developed and trained on SICM images and their corresponding masks to reconstruct the complete images from the undersampled data, ensuring the retention of structural integrity. This approach significantly reduces the image acquisition time (i.e., by 30-63%) without compromising quality, as validated through multiple quantitative metrics. Compared to conventional deep learning methods, the Partial-CNN demonstrates higher accuracy in reconstructing fine details and maintaining consistent height maps across skipped regions. It is shown that this method provides an increased temporal resolution and retains image fidelity, making it suitable for real-time dynamic SICM imaging and improving the smart scanning microscopy applications in time-resolved biological imaging.

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Publication Details

Journal
Small Methods
Published
2025-10-13
DOI
https://doi.org/10.1002/smtd.202501080
Citations
1
Primary Topic
Electrochemical Analysis and Applications
Type
article
Field-Weighted Citation Impact
0.52
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Deep‐Learning‐Assisted SICM for Enhanced Real‐Time Imaging of Nanoscale Biological Dynamics

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article

Deep‐Learning‐Assisted SICM for Enhanced Real‐Time Imaging of Nanoscale Biological Dynamics

Marcos Penedo, B. Drake, Volkan Cevher, Zahra Ayar, Jialin Shi, Jelena Ban, Aleksandra Rađenović, Helena Miljkovic, Igor Krawczuk, Samuel M. Leitão, Georg E. Fantner
article en
1 citations

Abstract

Scanning Ion Conductance Microscopy (SICM) provides high-resolution, nanoscale imaging of living cells, but it is generally limited by a slow scan rate, making it challenging to capture dynamic processes in real time. To tackle this challenge, an integrated data acquisition and computational framework is proposed that improves the temporal resolution of SICM by selectively skipping certain scan lines. A partial convolutional neural network (Partial-CNN) model is developed and trained on SICM images and their corresponding masks to reconstruct the complete images from the undersampled data, ensuring the retention of structural integrity. This approach significantly reduces the image acquisition time (i.e., by 30-63%) without compromising quality, as validated through multiple quantitative metrics. Compared to conventional deep learning methods, the Partial-CNN demonstrates higher accuracy in reconstructing fine details and maintaining consistent height maps across skipped regions. It is shown that this method provides an increased temporal resolution and retains image fidelity, making it suitable for real-time dynamic SICM imaging and improving the smart scanning microscopy applications in time-resolved biological imaging.

Small MethodsVol. 9(12)
Shenyang Institute of Automation (CN), University of Rijeka (HR), Chinese Academy of Sciences (CN), École Polytechnique Fédérale de Lausanne (CH)
Openalex Percentile: Top 34%
Electrochemical Analysis and Applications
0.52
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