Distill to Delete: Unlearning in Graph Networks With Knowledge Distillation

Graph unlearning has emerged as a pivotal method to delete information from an already trained graph neural network (GNN). One may delete nodes, a class of nodes, edges, or a class of edges. An unlearning method enables the GNN model to comply with data protection regulations (i.e., the right to be forgotten), adapt to evolving data distributions, and reduce the GPU-hours carbon footprint by avoiding repetitive retraining. Removing specific graph elements from graph data is challenging due to the inherent intricate relationships and neighborhood dependencies. Existing partitioning and aggregation-based methods have limitations due to their poor handling of local graph dependencies and additional overhead costs. Our work takes a novel approach to address these challenges in graph unlearning through knowledge distillation, as it distills to delete in GNN (D2DGN). It is an efficient model-agnostic distillation framework where the complete graph knowledge is divided and marked for retention and deletion. It performs distillation with response-based soft targets and feature-based node embedding while minimizing KL-divergence. The unlearned model effectively removes the influence of the deleted graph elements while preserving knowledge about the retained graph elements. D2DGN surpasses the performance of existing methods when evaluated on various real-world graph datasets by up to $\mathbf {43.1\%}$ (AUC) in edge and node unlearning tasks. Other notable advantages include better efficiency, better performance in removing target elements, preservation of performance for the retained elements, and zero overhead costs. Source code: https://github.com/MachineUnlearn/D2DGN.

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Publication Details

Journal
IEEE Transactions on Neural Networks and Learning Systems
Published
2025-10-09
DOI
https://doi.org/10.1109/tnnls.2025.3607995
Citations
3
Primary Topic
Advanced Graph Neural Networks
Type
article
Field-Weighted Citation Impact
7.44
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article

Distill to Delete: Unlearning in Graph Networks With Knowledge Distillation

Mohan Kankanhalli, Yash Sinha, Murari Mandal
3 citations
IEEE Transactions on Neural Networks and Learning Systems
Advanced Graph Neural Networks
7.44
article

Distill to Delete: Unlearning in Graph Networks With Knowledge Distillation

Mohan Kankanhalli, Yash Sinha, Murari Mandal
article en
3 citations

Abstract

Graph unlearning has emerged as a pivotal method to delete information from an already trained graph neural network (GNN). One may delete nodes, a class of nodes, edges, or a class of edges. An unlearning method enables the GNN model to comply with data protection regulations (i.e., the right to be forgotten), adapt to evolving data distributions, and reduce the GPU-hours carbon footprint by avoiding repetitive retraining. Removing specific graph elements from graph data is challenging due to the inherent intricate relationships and neighborhood dependencies. Existing partitioning and aggregation-based methods have limitations due to their poor handling of local graph dependencies and additional overhead costs. Our work takes a novel approach to address these challenges in graph unlearning through knowledge distillation, as it distills to delete in GNN (D2DGN). It is an efficient model-agnostic distillation framework where the complete graph knowledge is divided and marked for retention and deletion. It performs distillation with response-based soft targets and feature-based node embedding while minimizing KL-divergence. The unlearned model effectively removes the influence of the deleted graph elements while preserving knowledge about the retained graph elements. D2DGN surpasses the performance of existing methods when evaluated on various real-world graph datasets by up to $\mathbf {43.1\%}$ (AUC) in edge and node unlearning tasks. Other notable advantages include better efficiency, better performance in removing target elements, preservation of performance for the retained elements, and zero overhead costs. Source code: https://github.com/MachineUnlearn/D2DGN.

IEEE Transactions on Neural Networks and Learning SystemsVol. 37(1)
National University of Singapore (SG), KIIT University (IN)
Openalex Percentile: Top 3%
Advanced Graph Neural Networks
7.44
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Distill to Delete: Unlearning in Graph Networks With Knowledge Distillation — Mohan Kankanhalli, Yash Sinha, et al. · IEEE Transactions on Neural Networks and Learning Systems (2025) | TGRS Research Map | TGRS