A novel gene expression stability metric to unveil homeostasis and regulation

We explore the concept of gene expression stability within a homeostatic cell through the gene homeostasis Z-index, a measure that highlights genes under active regulation in response to internal and external stimuli. The Z-index uncovers distinct regulatory activities and patterns driven by a small subset of cells, providing insights that traditional mean-based methods often overlook. By capturing subtle regulatory dynamics, this approach highlights the importance of stability metrics in uncovering detailed gene regulation patterns that underpin cellular adaptation.

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Publication Details

Journal
Genome biology
Published
2025-10-10
DOI
https://doi.org/10.1186/s13059-025-03810-4
Primary Topic
Single-cell and spatial transcriptomics
Type
article
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article

A novel gene expression stability metric to unveil homeostasis and regulation

Mengjie Chen
Genome biology
Single-cell and spatial transcriptomics
article

A novel gene expression stability metric to unveil homeostasis and regulation

Mengjie Chen
article en

Abstract

We explore the concept of gene expression stability within a homeostatic cell through the gene homeostasis Z-index, a measure that highlights genes under active regulation in response to internal and external stimuli. The Z-index uncovers distinct regulatory activities and patterns driven by a small subset of cells, providing insights that traditional mean-based methods often overlook. By capturing subtle regulatory dynamics, this approach highlights the importance of stability metrics in uncovering detailed gene regulation patterns that underpin cellular adaptation.

Genome biologyVol. 26(1)
University of Chicago (US)
Openalex Percentile: Top 75%
Single-cell and spatial transcriptomics
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