Protocol for measuring cellular energetics through noncanonical amino acid tagging in human peripheral blood and murine tissue immune cells

Cellular metabolism dictates immune cell function, yet we lack tools to functionally profile immunometabolism in low-yield, complex samples. We present a flow cytometry-based protocol for measuring cellular energetics through noncanonical amino acid tagging (CENCAT) in human peripheral blood and murine tissue immune cells. We describe steps for sample preparation, metabolic inhibition, protein synthesis analysis using click chemistry, immunophenotyping, and calculation of metabolic dependencies. For complete details on the use and execution of this protocol, please refer to Vrieling et al.<sup>1</sup>.

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Journal
STAR Protocols
Published
2025-10-09
DOI
https://doi.org/10.1016/j.xpro.2025.104134
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
0.00

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article

Protocol for measuring cellular energetics through noncanonical amino acid tagging in human peripheral blood and murine tissue immune cells

Rinke Stienstra, Hendrik J.P. van der Zande, Frank Vrieling, Marline Dumont
STAR Protocols
RNA and protein synthesis mechanisms
article

Protocol for measuring cellular energetics through noncanonical amino acid tagging in human peripheral blood and murine tissue immune cells

Rinke Stienstra, Hendrik J.P. van der Zande, Frank Vrieling, Marline Dumont
article en

Abstract

Cellular metabolism dictates immune cell function, yet we lack tools to functionally profile immunometabolism in low-yield, complex samples. We present a flow cytometry-based protocol for measuring cellular energetics through noncanonical amino acid tagging (CENCAT) in human peripheral blood and murine tissue immune cells. We describe steps for sample preparation, metabolic inhibition, protein synthesis analysis using click chemistry, immunophenotyping, and calculation of metabolic dependencies. For complete details on the use and execution of this protocol, please refer to Vrieling et al.<sup>1</sup>.

STAR ProtocolsVol. 6(4)
Radboud University Nijmegen (NL), University Medical Center (US), Radboud University Medical Center (NL), Wageningen University & Research (NL)
Health~Holland, Universiteit Leiden, ZonMw, Diabetes Fonds, European Society for Clinical Nutrition and Metabolism, Canadian Institutes of Health Research
Openalex Percentile: Top 75%
RNA and protein synthesis mechanisms
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