KAT5-mediated acetylation of PC4 facilitates DNA repair by promoting chromatin reorganization

Human positive coactivator 4 (PC4) is a highly abundant non-histone chromatin protein involved in diverse cellular processes, including transcription regulation, genome organization, autophagy, B-cell differentiation, neurogenesis, DNA repair, etc. Most PC4 is phosphorylated in cells, which interacts with core histones and the linker histone H1 to confer the compact heterochromatin state of the genome. Knocking down PC4 at both cellular and organismal levels leads to significant chromatin decondensation, altered epigenetic landscape, enhanced autophagy, and increased DNA damage susceptibility. Here, we report that besides p300, PC4 also gets acetylated by DNA repair, facilitating lysine acetyltransferase KAT5 (Tip60) at a specific lysine residue (PC4K80) when the cells are subjected to DNA damage. The vulnerability of DNA in PC4 devoid cells was substantially reduced by reintroducing wild-type PC4 to the cells but not the mutant PC4 (PC4K80R), defective in KAT5-mediated acetylation. High-resolution microscopy techniques, including transmission electron microscopy and atomic force microscopy, are employed to visualize chromatin structural changes in response to DNA damage and repair in a Tip60-mediated PC4 acetylation-dependent manner. Presumably, KAT5-mediated acetylation of PC4 at K80 residue facilitates access to the damaged DNA by altering chromatin structures at damage sites, thus promoting DNA repair. This process could be highly significant both in cancer and in aging.

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Publication Details

Journal
Nucleic Acids Research
Published
2025-09-23
DOI
https://doi.org/10.1093/nar/gkaf974
Primary Topic
Genomics and Chromatin Dynamics
Type
article
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article

KAT5-mediated acetylation of PC4 facilitates DNA repair by promoting chromatin reorganization

Sweta Sikder, Ramalingam Peraman, Siddharth Singh, V. Ravichandiran et al.
Nucleic Acids Research
Genomics and Chromatin Dynamics
article

KAT5-mediated acetylation of PC4 facilitates DNA repair by promoting chromatin reorganization

Sweta Sikder, Ramalingam Peraman, Siddharth Singh, V. Ravichandiran, R. Mukhopadhyay, Jayanta Sarkar, Tapas K. Kundu, Kalyan Mitra, Aayushi Agrawal, Nikhil Pallaprolu, Rakesh Sharma, Sourav Mondal
article en

Abstract

Human positive coactivator 4 (PC4) is a highly abundant non-histone chromatin protein involved in diverse cellular processes, including transcription regulation, genome organization, autophagy, B-cell differentiation, neurogenesis, DNA repair, etc. Most PC4 is phosphorylated in cells, which interacts with core histones and the linker histone H1 to confer the compact heterochromatin state of the genome. Knocking down PC4 at both cellular and organismal levels leads to significant chromatin decondensation, altered epigenetic landscape, enhanced autophagy, and increased DNA damage susceptibility. Here, we report that besides p300, PC4 also gets acetylated by DNA repair, facilitating lysine acetyltransferase KAT5 (Tip60) at a specific lysine residue (PC4K80) when the cells are subjected to DNA damage. The vulnerability of DNA in PC4 devoid cells was substantially reduced by reintroducing wild-type PC4 to the cells but not the mutant PC4 (PC4K80R), defective in KAT5-mediated acetylation. High-resolution microscopy techniques, including transmission electron microscopy and atomic force microscopy, are employed to visualize chromatin structural changes in response to DNA damage and repair in a Tip60-mediated PC4 acetylation-dependent manner. Presumably, KAT5-mediated acetylation of PC4 at K80 residue facilitates access to the damaged DNA by altering chromatin structures at damage sites, thus promoting DNA repair. This process could be highly significant both in cancer and in aging.

Nucleic Acids ResearchVol. 53(18)
Jawaharlal Nehru Centre for Advanced Scientific Research (IN), Indian Association for the Cultivation of Science (IN), Central Drug Research Institute (IN), National Institute of Pharmaceutical Education and Research (IN), Academy of Scientific and Innovative Research (IN)
Openalex Percentile: Top 75%
Genomics and Chromatin Dynamics
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