SRSF12 is a primate-specific splicing factor that induces a tissue-specific gene expression program

Alternative splicing expands proteomic diversity and is tightly regulated by splicing factors, including the serine/arginine-rich (SR) protein family. Here, we analyze the poorly characterized protein SRSF12. Although SRSF12 is conserved across vertebrates, it is lowly expressed in most mammals, and we find that SRSF12 knockout mice do not display overt physiological or transcriptomic alterations. In contrast, SRSF12 is more highly expressed in primates, where it is predominantly transcribed in the testes, oocytes, and brain. SRSF12 colocalizes with other splicing components to nuclear speckles and interacts with splicing regulatory factors in cultured human cells. Strikingly, ectopic expression of SRSF12 in human cells induces widespread transcriptional changes, activating meiosis-, testis-, and brain-specific genes. SRSF12 overexpression also leads to mitotic arrest and cell death, phenotypes that require both its structured RNA recognition motif and intrinsically disordered arginine/serine-rich C-terminal domain. Together, our results suggest that SRSF12 has evolved primate-specific expression to regulate testis- and brain-specific genes.

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Journal
Molecular Biology of the Cell
Published
2025-10-08
DOI
https://doi.org/10.1091/mbc.e25-07-0352
Primary Topic
RNA Research and Splicing
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article
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article

SRSF12 is a primate-specific splicing factor that induces a tissue-specific gene expression program

Sarah L. Cady, Jimmy Ly, Iain M. Cheeseman, S. Haug et al.
Molecular Biology of the Cell
RNA Research and Splicing
article

SRSF12 is a primate-specific splicing factor that induces a tissue-specific gene expression program

Sarah L. Cady, Jimmy Ly, Iain M. Cheeseman, S. Haug, Ekaterina Khalizeva
article en

Abstract

Alternative splicing expands proteomic diversity and is tightly regulated by splicing factors, including the serine/arginine-rich (SR) protein family. Here, we analyze the poorly characterized protein SRSF12. Although SRSF12 is conserved across vertebrates, it is lowly expressed in most mammals, and we find that SRSF12 knockout mice do not display overt physiological or transcriptomic alterations. In contrast, SRSF12 is more highly expressed in primates, where it is predominantly transcribed in the testes, oocytes, and brain. SRSF12 colocalizes with other splicing components to nuclear speckles and interacts with splicing regulatory factors in cultured human cells. Strikingly, ectopic expression of SRSF12 in human cells induces widespread transcriptional changes, activating meiosis-, testis-, and brain-specific genes. SRSF12 overexpression also leads to mitotic arrest and cell death, phenotypes that require both its structured RNA recognition motif and intrinsically disordered arginine/serine-rich C-terminal domain. Together, our results suggest that SRSF12 has evolved primate-specific expression to regulate testis- and brain-specific genes.

Molecular Biology of the CellVol. 36(11)
Whitehead Institute for Biomedical Research (US), Massachusetts Institute of Technology (US)
Openalex Percentile: Top 75%
RNA Research and Splicing
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SRSF12 is a primate-specific splicing factor that induces a tissue-specific gene expression program — Sarah L. Cady, Jimmy Ly, et al. · Molecular Biology of the Cell (2025) | TGRS Research Map | TGRS