Comparative analysis of imputation methods in machine learning models

Missing data is a prevalent issue in machine learning and data analysis that impacts the credibility and performance of predictive models. This article provides a comprehensive study of missing data, its types, consequences, and popular imputation methods. Using real datasets, we compare the performance of Mean/Median Imputation, K-Nearest Neighbors (KNN) Imputation, Multiple Imputation, Regression Imputation, and Hot Deck Imputation. Furthermore, we study how these imputation techniques affect machine learning models such as Random Forest, Gradient Boosting Machines (GBM), and Support Vector Machines (SVM). Our study emphasizes the need for careful experimentation and model-specific investigation when handling missing data, where an important part is played by the selection of suitable imputation techniques based on dataset attributes and machine learning models. Lastly, our findings underscore the importance of tailored imputation strategies in enhancing model fit and ensuring stable analytical findings.

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Publication Details

Journal
Science Technologies Innovation
Published
2025-10-08
DOI
https://doi.org/10.35668/2520-6524-2025-3-07
Primary Topic
Statistical Methods and Inference
Type
article
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article

Comparative analysis of imputation methods in machine learning models

A. O. Melnyk, Iryna Rozora
Science Technologies Innovation
Statistical Methods and Inference
article

Comparative analysis of imputation methods in machine learning models

A. O. Melnyk, Iryna Rozora
article en

Abstract

Missing data is a prevalent issue in machine learning and data analysis that impacts the credibility and performance of predictive models. This article provides a comprehensive study of missing data, its types, consequences, and popular imputation methods. Using real datasets, we compare the performance of Mean/Median Imputation, K-Nearest Neighbors (KNN) Imputation, Multiple Imputation, Regression Imputation, and Hot Deck Imputation. Furthermore, we study how these imputation techniques affect machine learning models such as Random Forest, Gradient Boosting Machines (GBM), and Support Vector Machines (SVM). Our study emphasizes the need for careful experimentation and model-specific investigation when handling missing data, where an important part is played by the selection of suitable imputation techniques based on dataset attributes and machine learning models. Lastly, our findings underscore the importance of tailored imputation strategies in enhancing model fit and ensuring stable analytical findings.

Science Technologies Innovation(3(35))
Taras Shevchenko National University of Kyiv (UA)
Openalex Percentile: Top 74%
Statistical Methods and Inference
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Comparative analysis of imputation methods in machine learning models — A. O. Melnyk, Iryna Rozora · Science Technologies Innovation (2025) | TGRS Research Map | TGRS