Studying the Outcomes and Mechanisms of Carbocationic Rearrangements Using Algorithm‐Augmented Experimentation

Carbocationic rearrangements are fundamental to both biosynthetic and synthetic chemistries, yet their high reactivity and mechanistic complexity often defy intuitive prediction of outcomes. Herein, HopCat, a hybrid algorithmic platform combining rule‐based transformation logic with quantum‐mechanically informed kinetics, is applied to explore the rearrangement networks of acid‐catalyzed terpenoid transformations. Using a series of terpenoid substrates, an array of structurally diverse and unprecedented products is obtained. It is narated how HopCat can work synergistically with a human chemist to guide product assignment, downselect product candidates based on NMR cues, and reconstruct plausible, multistep mechanistic pathways, including those involving unanticipated intermediates.

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Publication Details

Journal
ChemistryEurope
Published
2025-10-07
DOI
https://doi.org/10.1002/ceur.202500189
Primary Topic
Plant biochemistry and biosynthesis
Type
article
Field-Weighted Citation Impact
0.00

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article

Studying the Outcomes and Mechanisms of Carbocationic Rearrangements Using Algorithm‐Augmented Experimentation

Wiktor Beker, Sebastian Baś, Tomasz Klucznik, Louis Gadina et al.
ChemistryEurope
Plant biochemistry and biosynthesis
article

Studying the Outcomes and Mechanisms of Carbocationic Rearrangements Using Algorithm‐Augmented Experimentation

Wiktor Beker, Sebastian Baś, Tomasz Klucznik, Louis Gadina, Bartosz A. Grzybowski, Ahmad Makkawi, Yasemin Bilgi‐Gadina
article en

Abstract

Carbocationic rearrangements are fundamental to both biosynthetic and synthetic chemistries, yet their high reactivity and mechanistic complexity often defy intuitive prediction of outcomes. Herein, HopCat, a hybrid algorithmic platform combining rule‐based transformation logic with quantum‐mechanically informed kinetics, is applied to explore the rearrangement networks of acid‐catalyzed terpenoid transformations. Using a series of terpenoid substrates, an array of structurally diverse and unprecedented products is obtained. It is narated how HopCat can work synergistically with a human chemist to guide product assignment, downselect product candidates based on NMR cues, and reconstruct plausible, multistep mechanistic pathways, including those involving unanticipated intermediates.

ChemistryEuropeVol. 4(2)
Jagiellonian University (PL), Institute for Basic Science (KR), Institute of Organic Chemistry (PL), HEM Technologies (United States) (US), Ulsan National Institute of Science and Technology (KR), Polish Academy of Sciences (PL)
Narodowym Centrum Nauki
Openalex Percentile: Top 75%
Plant biochemistry and biosynthesis
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Studying the Outcomes and Mechanisms of Carbocationic Rearrangements Using Algorithm‐Augmented Experimentation — Wiktor Beker, Sebastian Baś, et al. · ChemistryEurope (2025) | TGRS Research Map | TGRS