Design, Synthesis, Molecular Docking, <scp>ADME</scp> ‐T and In Vitro Anticancer Assessment of Phenyl‐Substituted‐Pyrimidin‐Benzenesulfonamide Derivatives as Potential <scp> BRAF <sup>V600E</sup> </scp> <sup> / <scp>WT</scp> </sup> Inhibitors

BRAF is one of the most commonly mutated oncogenes in human cancers. More than 90% of BRAF mutations are associated with malignant melanoma. Given the pivotal role of BRAF<sup>V600E/WT</sup> mutations in melanoma progression and therapy resistance, our study focused on the design of phenyl-substituted pyrimidin-benzenesulfonamide hybrids in the [αC-OUT/DFG-IN] conformation, inspired by previously synthesized molecules structurally related to FDA-approved BRAF inhibitors. A total of ten derivatives were synthesized, and their ADME-T properties, in silico binding affinities, in vitro cytotoxic activities against a melanoma cell line and BRAF<sup>V600E/WT</sup> kinase assay were thoroughly evaluated. All compounds exhibit selective and stronger affinity for the BRAF<sup>V600E</sup> mutant over the wild-type BRAF protein and also adhere to Lipinski's Rule of Five. Overall, both computational and biological evaluations support that the synthesized compounds, particularly VA03, exhibit greater potency and selectivity toward the BRAF<sup>V600E</sup> mutant protein. Furthermore, the presence of electron-withdrawing groups at the R<sub>1</sub> position appears to significantly enhance the cytotoxic activity of these derivatives.

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Journal
Chemical Biology & Drug Design
Published
2025-10-01
DOI
https://doi.org/10.1111/cbdd.70179
Primary Topic
Melanoma and MAPK Pathways
Type
article
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article

Design, Synthesis, Molecular Docking, ADME ‐T and In Vitro Anticancer Assessment of Phenyl‐Substituted‐Pyrimidin‐Benzenesulfonamide Derivatives as Potential BRAF V600E / WT Inhibitors

Prateek Pathak, Amita Verma, Vimal H. Prajapati, Habibullah Khalilullah et al.
Chemical Biology & Drug Design
Melanoma and MAPK Pathways
article

Design, Synthesis, Molecular Docking, ADME ‐T and In Vitro Anticancer Assessment of Phenyl‐Substituted‐Pyrimidin‐Benzenesulfonamide Derivatives as Potential BRAF V600E / WT Inhibitors

Prateek Pathak, Amita Verma, Vimal H. Prajapati, Habibullah Khalilullah, Adarsh Kumar, Ankit Kumar Singh, Pradeep Kumar, Vimlendu Kumar Sah, A. K. Kalsi
article en

Abstract

BRAF is one of the most commonly mutated oncogenes in human cancers. More than 90% of BRAF mutations are associated with malignant melanoma. Given the pivotal role of BRAF<sup>V600E/WT</sup> mutations in melanoma progression and therapy resistance, our study focused on the design of phenyl-substituted pyrimidin-benzenesulfonamide hybrids in the [αC-OUT/DFG-IN] conformation, inspired by previously synthesized molecules structurally related to FDA-approved BRAF inhibitors. A total of ten derivatives were synthesized, and their ADME-T properties, in silico binding affinities, in vitro cytotoxic activities against a melanoma cell line and BRAF<sup>V600E/WT</sup> kinase assay were thoroughly evaluated. All compounds exhibit selective and stronger affinity for the BRAF<sup>V600E</sup> mutant over the wild-type BRAF protein and also adhere to Lipinski's Rule of Five. Overall, both computational and biological evaluations support that the synthesized compounds, particularly VA03, exhibit greater potency and selectivity toward the BRAF<sup>V600E</sup> mutant protein. Furthermore, the presence of electron-withdrawing groups at the R<sub>1</sub> position appears to significantly enhance the cytotoxic activity of these derivatives.

Chemical Biology & Drug DesignVol. 106(4)
Central University of Punjab (IN), Qassim University (SA), Sam Higginbottom Institute of Agriculture (IN), Buraydah Colleges (SA), GITAM University (IN)
Openalex Percentile: Top 75%
Melanoma and MAPK Pathways
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