Parsing GTF and FASTA files using the eccLib Library

This library is implemented in C and distributed under the GPL-3.0 licence. It is compatible with any system that has the Python interpreter (CPython) installed. The use of C enables numerous optimizations at both the implementation and algorithmic levels, which are either unachievable or impractical in Python.

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Publication Details

Journal
Bioinformatics
Published
2025-10-01
DOI
https://doi.org/10.1093/bioinformatics/btaf558
Primary Topic
Mathematics, Computing, and Information Processing
Type
article
Field-Weighted Citation Impact
0.00
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article

Parsing GTF and FASTA files using the eccLib Library

Zuzanna Karolina Filutowska, Tomasz Chady
Bioinformatics
Mathematics, Computing, and Information Processing
article

Parsing GTF and FASTA files using the eccLib Library

Zuzanna Karolina Filutowska, Tomasz Chady
article en

Abstract

This library is implemented in C and distributed under the GPL-3.0 licence. It is compatible with any system that has the Python interpreter (CPython) installed. The use of C enables numerous optimizations at both the implementation and algorithmic levels, which are either unachievable or impractical in Python.

BioinformaticsVol. 41(10)
Adam Mickiewicz University in Poznań (PL)
Openalex Percentile: Top 71%
Mathematics, Computing, and Information Processing
DOIOpen Access PDFOpenAlex
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Parsing GTF and FASTA files using the eccLib Library — Zuzanna Karolina Filutowska, Tomasz Chady · Bioinformatics (2025) | TGRS Research Map | TGRS