Improving FAIR Compliance for High-Dimensional Data via Automated Metadata Extraction
High-dimensional datasets are becoming an increasingly vital asset in the machine learning and AI domains due to their ability to capture large volumes of structured, self-descriptive information. Research data repositories play a key role in supporting the documentation, discoverability, and reuse of such data. This paper highlights the growing presence of high-dimensional formats—particularly NetCDF and HDF5—underscoring the need for better infrastructure to support them. We use a large language model to assess the quality of metadata associated with these files and find that user-provided metadata often falls short when compared to the richness of embedded metadata within the files themselves. In response, we implement an automated metadata extraction process during file ingestion, offering a practical pathway to FAIR-ify high-dimensional data. Our empirical analysis and technical solution are demonstrated through integration with the Dataverse data repository platform.
Authors
- Danielle Braun (ORCID: https://orcid.org/0000-0002-5177-8598)
- Jan Range (ORCID: https://orcid.org/0000-0001-6478-1051)
- Amber Leahey (ORCID: https://orcid.org/0000-0001-6476-223X)
- Philip Durbin (ORCID: https://orcid.org/0000-0002-9528-9470)
- Wei Li (ORCID: https://orcid.org/0000-0001-7547-2908)
- A. Trisovic (ORCID: https://orcid.org/0000-0003-1991-0533)
Institutions
- Xidian University (CN)
- Stuttgart Technical University of Applied Sciences (DE)
- Quantitative BioSciences (US)
- Dana-Farber Cancer Institute (US)
- Ontario Council of University Libraries (CA)
- Dana-Farber/Harvard Cancer Center (US)
- Artificial Intelligence in Medicine (Canada) (CA)
Publication Details
- Published
- 2025-09-15
- DOI
- https://doi.org/10.1109/escience65000.2025.00090
- Primary Topic
- Research Data Management Practices
- Type
- article
- Field-Weighted Citation Impact
- 0.00