Improving FAIR Compliance for High-Dimensional Data via Automated Metadata Extraction

High-dimensional datasets are becoming an increasingly vital asset in the machine learning and AI domains due to their ability to capture large volumes of structured, self-descriptive information. Research data repositories play a key role in supporting the documentation, discoverability, and reuse of such data. This paper highlights the growing presence of high-dimensional formats—particularly NetCDF and HDF5—underscoring the need for better infrastructure to support them. We use a large language model to assess the quality of metadata associated with these files and find that user-provided metadata often falls short when compared to the richness of embedded metadata within the files themselves. In response, we implement an automated metadata extraction process during file ingestion, offering a practical pathway to FAIR-ify high-dimensional data. Our empirical analysis and technical solution are demonstrated through integration with the Dataverse data repository platform.

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Published
2025-09-15
DOI
https://doi.org/10.1109/escience65000.2025.00090
Primary Topic
Research Data Management Practices
Type
article
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article

Improving FAIR Compliance for High-Dimensional Data via Automated Metadata Extraction

Danielle Braun, Jan Range, Amber Leahey, Philip Durbin et al.
Research Data Management Practices
article

Improving FAIR Compliance for High-Dimensional Data via Automated Metadata Extraction

Danielle Braun, Jan Range, Amber Leahey, Philip Durbin, Wei Li, A. Trisovic
article en

Abstract

High-dimensional datasets are becoming an increasingly vital asset in the machine learning and AI domains due to their ability to capture large volumes of structured, self-descriptive information. Research data repositories play a key role in supporting the documentation, discoverability, and reuse of such data. This paper highlights the growing presence of high-dimensional formats—particularly NetCDF and HDF5—underscoring the need for better infrastructure to support them. We use a large language model to assess the quality of metadata associated with these files and find that user-provided metadata often falls short when compared to the richness of embedded metadata within the files themselves. In response, we implement an automated metadata extraction process during file ingestion, offering a practical pathway to FAIR-ify high-dimensional data. Our empirical analysis and technical solution are demonstrated through integration with the Dataverse data repository platform.

Xidian University (CN), Stuttgart Technical University of Applied Sciences (DE), Quantitative BioSciences (US), Dana-Farber Cancer Institute (US), Ontario Council of University Libraries (CA), Dana-Farber/Harvard Cancer Center (US), Artificial Intelligence in Medicine (Canada) (CA)
Openalex Percentile: Top 59%
Research Data Management Practices
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