Data discovery, analysis and reproducibility in Virtual Research Environments

During the ESCAPE project, a pilot analysis facility was developed with a bottom-up approach, in collaboration with all the project partners. As a result, the CERN Virtual Research Environment (VRE) initiative proposes a workspace that facilitates data access from the ESCAPE Data Lake, managed by Rucio, a data management framework, and supports interactive analysis via Jupyter notebooks. The facility offers custom software stacks and access to CVMFS, and connects to local data processing resources through REANA, an open-source framework developed by CERN IT for reanalysis and reproducibility. The CERN VRE deploys an instance of REANA, allowing users to utilise its features together with the analysis facility’s services. Integrating heterogeneous services with a unified interface significantly eases the user experience. Furthermore, in line with the ESCAPE Open Collaboration, the development of open source tools that can be leveraged by different physics communities with similar analysis strategies, laying the foundation of common lifecycle analysis practices. Therefore, in order to foster accessibility, as well as interactivity, reproducibility and data preservation to more complex infrastructure services, the development of user-friendly middleware should be prioritized. This contribution focuses on the connection of REANA and Zenodo to the CERN Virtual Research Environment’s interface through Jupyter extensions. The development of these extensions makes it possible to use the Virtual Research Environment as a single workspace to enhance the lifecycle of research analysis: from data discovery and data access, through interactive analysis and offload to computing resources, to reproducibility and preservation of results.

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Publication Details

Journal
EPJ Web of Conferences
Published
2025-01-01
DOI
https://doi.org/10.1051/epjconf/202533701018
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
0.00

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article

Data discovery, analysis and reproducibility in Virtual Research Environments

G. Guerrieri, Georgy Skorobogatov, X. Espinal Curull, Rubén Mercado et al.
EPJ Web of Conferences
Scientific Computing and Data Management
article

Data discovery, analysis and reproducibility in Virtual Research Environments

G. Guerrieri, Georgy Skorobogatov, X. Espinal Curull, Rubén Mercado, Hugo González Labrador, Enrique García García, Michael Ryan Zengel
article en

Abstract

During the ESCAPE project, a pilot analysis facility was developed with a bottom-up approach, in collaboration with all the project partners. As a result, the CERN Virtual Research Environment (VRE) initiative proposes a workspace that facilitates data access from the ESCAPE Data Lake, managed by Rucio, a data management framework, and supports interactive analysis via Jupyter notebooks. The facility offers custom software stacks and access to CVMFS, and connects to local data processing resources through REANA, an open-source framework developed by CERN IT for reanalysis and reproducibility. The CERN VRE deploys an instance of REANA, allowing users to utilise its features together with the analysis facility’s services. Integrating heterogeneous services with a unified interface significantly eases the user experience. Furthermore, in line with the ESCAPE Open Collaboration, the development of open source tools that can be leveraged by different physics communities with similar analysis strategies, laying the foundation of common lifecycle analysis practices. Therefore, in order to foster accessibility, as well as interactivity, reproducibility and data preservation to more complex infrastructure services, the development of user-friendly middleware should be prioritized. This contribution focuses on the connection of REANA and Zenodo to the CERN Virtual Research Environment’s interface through Jupyter extensions. The development of these extensions makes it possible to use the Virtual Research Environment as a single workspace to enhance the lifecycle of research analysis: from data discovery and data access, through interactive analysis and offload to computing resources, to reproducibility and preservation of results.

EPJ Web of ConferencesVol. 337
European Organization for Nuclear Research (CH), Universitat de Barcelona (ES)
European Commission, Generalitat de Catalunya
Openalex Percentile: Top 73%
Scientific Computing and Data Management
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