Benchmarking massively-parallel Analysis Grand Challenge workflows using Snakemake and REANA

We have created a Snakemake computational analysis workflow corresponding to the IRIS-HEP Analysis Grand Challenge (AGC) example studying ttbar production channels in the CMS open data. We describe the extensions to the AGC pipeline that allowed porting of the notebook-based analysis to Snakemake. We discuss the applicability of the Snakemake multi-cascading paradigm for running massively-parallel RECAST-compatible physics analysis workflows where the analysis process may run over numerous independent data samples with large number of independent individual data files in a fully concurrent manner. The created Snakemake workflow example was run on the RE- ANA reproducible analysis platform. We describe the improvements brought to the REANA job scheduling, tracking and termination processes for massivelyparallel Snakemake workflows. We present results of several numerical experiments running the same workflow on the Kubernetes cluster with increasing number of identical nodes. We infer on the feasibility of REANA to schedule numerous concurrent jobs from the same Snakemake workflow rule, study the importance of cluster node size from the point of view of the job memory requirements, as well as estimate the overhead of dispatching workload to many cluster nodes. The results demonstrate the applicability of Snakemake for even massively-parallel RECAST-compatible physics analysis workflows.

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Publication Details

Journal
EPJ Web of Conferences
Published
2025-01-01
DOI
https://doi.org/10.1051/epjconf/202533701168
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
0.00

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article

Benchmarking massively-parallel Analysis Grand Challenge workflows using Snakemake and REANA

A. Held, Tibor Šimko, Marco Donadoni, M. Feickert et al.
EPJ Web of Conferences
Scientific Computing and Data Management
article

Benchmarking massively-parallel Analysis Grand Challenge workflows using Snakemake and REANA

A. Held, Tibor Šimko, Marco Donadoni, M. Feickert, Oksana Shadura, Andrii Povsten
article en

Abstract

We have created a Snakemake computational analysis workflow corresponding to the IRIS-HEP Analysis Grand Challenge (AGC) example studying ttbar production channels in the CMS open data. We describe the extensions to the AGC pipeline that allowed porting of the notebook-based analysis to Snakemake. We discuss the applicability of the Snakemake multi-cascading paradigm for running massively-parallel RECAST-compatible physics analysis workflows where the analysis process may run over numerous independent data samples with large number of independent individual data files in a fully concurrent manner. The created Snakemake workflow example was run on the RE- ANA reproducible analysis platform. We describe the improvements brought to the REANA job scheduling, tracking and termination processes for massivelyparallel Snakemake workflows. We present results of several numerical experiments running the same workflow on the Kubernetes cluster with increasing number of identical nodes. We infer on the feasibility of REANA to schedule numerous concurrent jobs from the same Snakemake workflow rule, study the importance of cluster node size from the point of view of the job memory requirements, as well as estimate the overhead of dispatching workload to many cluster nodes. The results demonstrate the applicability of Snakemake for even massively-parallel RECAST-compatible physics analysis workflows.

EPJ Web of ConferencesVol. 337
University of Nebraska–Lincoln (US), University of Wisconsin–Madison (US), Princeton University (US), European Organization for Nuclear Research (CH)
National Science Foundation
Openalex Percentile: Top 73%
Scientific Computing and Data Management
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Benchmarking massively-parallel Analysis Grand Challenge workflows using Snakemake and REANA — A. Held, Tibor Šimko, et al. · EPJ Web of Conferences (2025) | TGRS Research Map | TGRS