Towards large-scale chemical reaction image parsing <i>via</i> a multimodal large language model

Artificial intelligence (AI) has demonstrated significant promise in advancing organic chemistry research; however, its effectiveness depends on the availability of high-quality chemical reaction data. Currently, most published chemical reactions are not available in machine-readable form, limiting the broader application of AI in this field. The extraction of published chemical reactions into structured databases still relies heavily on manual curation, and robust automatic parsing of chemical reaction images into machine-readable data remains a significant challenge. To address this, we introduce the Reaction Image Multimodal large language model (RxnIM), the first multimodal large language model specifically designed to parse chemical reaction images into machine-readable reaction data. RxnIM not only extracts key chemical components from reaction images but also interprets the textual content that describes reaction conditions. Together with a specially designed large-scale dataset generation method to support model training, our approach achieves excellent performance, with an average <i>F</i> <sub>1</sub> score of 88% on various benchmarks, surpassing state-of-the-art methods by an average of 5%. This represents a crucial step toward the automatic construction of large databases of machine-readable reaction data parsed from images in the chemistry literature, providing essential data resources for AI research in chemistry. The source code, model checkpoints, and datasets developed in this work are released under permissive licenses.

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Publication Details

Journal
Chemical Science
Published
2025-01-01
DOI
https://doi.org/10.1039/d5sc04173b
Citations
2
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
1.04
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article

Towards large-scale chemical reaction image parsing via a multimodal large language model

Hanyu Gao, Yong Huang, Hao Chen, Jianwei Sun et al.
2 citations
Chemical Science
Machine Learning in Materials Science
1.04
article

Towards large-scale chemical reaction image parsing via a multimodal large language model

Hanyu Gao, Yong Huang, Hao Chen, Jianwei Sun, Linyan Li, Ching Ting Leung, Yufan Chen
article en
2 citations

Abstract

Artificial intelligence (AI) has demonstrated significant promise in advancing organic chemistry research; however, its effectiveness depends on the availability of high-quality chemical reaction data. Currently, most published chemical reactions are not available in machine-readable form, limiting the broader application of AI in this field. The extraction of published chemical reactions into structured databases still relies heavily on manual curation, and robust automatic parsing of chemical reaction images into machine-readable data remains a significant challenge. To address this, we introduce the Reaction Image Multimodal large language model (RxnIM), the first multimodal large language model specifically designed to parse chemical reaction images into machine-readable reaction data. RxnIM not only extracts key chemical components from reaction images but also interprets the textual content that describes reaction conditions. Together with a specially designed large-scale dataset generation method to support model training, our approach achieves excellent performance, with an average <i>F</i> <sub>1</sub> score of 88% on various benchmarks, surpassing state-of-the-art methods by an average of 5%. This represents a crucial step toward the automatic construction of large databases of machine-readable reaction data parsed from images in the chemistry literature, providing essential data resources for AI research in chemistry. The source code, model checkpoints, and datasets developed in this work are released under permissive licenses.

Chemical ScienceVol. 16(45)
City University of Hong Kong (HK), Hong Kong University of Science and Technology (HK), University of Hong Kong (HK)
Openalex Percentile: Top 22%
Machine Learning in Materials Science
1.04
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