DeNoFo: a file format and toolkit for standardized, comparable <i>de novo</i> gene annotation
DeNoFo is available through the official Python Package Index (PyPI) and at https://github.com/EDohmen/denofo. All tools have a graphical user interface and a command line interface. The toolkit is implemented in Python3, available for all major platforms and installable with pip and uv.
Authors
- Anna Grandchamp (ORCID: https://orcid.org/0000-0003-3018-3138)
- Victor Luria (ORCID: https://orcid.org/0000-0003-0558-0983)
- Paul Roginski (ORCID: https://orcid.org/0000-0003-0297-723X)
- Amir Karger (ORCID: https://orcid.org/0000-0002-4561-3850)
- Elias Dohmen (ORCID: https://orcid.org/0000-0002-7203-2314)
- Lars A. Eicholt (ORCID: https://orcid.org/0000-0002-3985-3698)
- Margaux Aubel (ORCID: https://orcid.org/0000-0003-1653-9441)
Institutions
- Boston Children's Hospital (US)
- Centre National de la Recherche Scientifique (FR)
- Harvard University (US)
- Inserm (FR)
- Aix-Marseille Université (FR)
- University of Münster (DE)
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Université Paris-Saclay (FR)
- Yale University (US)
- Institute for Biodiversity (DE)
- Institut de Biologie Intégrative de la Cellule (FR)
- Theories and Approaches of Genomic Complexity (FR)
- CEA Paris-Saclay (FR)
- Center for Systems Biology (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-10-01
- DOI
- https://doi.org/10.1093/bioinformatics/btaf539
- Citations
- 3
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 2.42
Funders
- Deutsche Forschungsgemeinschaft
- Volkswagen Foundation
- Westfälische Wilhelms-Universität Münster
- Servier
- National Institutes of Health