Global constraint principle for microbial growth laws

Understanding complex living systems requires identifying universal phenomenological laws that are independent of species and molecular-biological details. The Monod equation is a cornerstone of phenomenological microbial growth laws, depicting the growth rate as a saturating function of a single substrate. Because of its similarity in functional form to the Michaelis-Menten equation, cellular growth is often thought to be limited by a single reaction. However, cellular growth generically results from the coordination of thousands of metabolic reactions and diverse intracellular limited resources. Consequently, the mechanistic origins of the Monod equation remain controversial, and its extension has encountered limitations. Here, we propose the global constraint principle for cellular growth: As one nutrient becomes more available, other intracellular resources become limiting, driving transitions to distinct modes of resource allocation. Based on a general framework of constraint-based modeling and its dual formulations, we mathematically prove that, in general, microbial growth kinetics curves are monotonically increasing and concave with respect to nutrient availability. Numerical simulations using genome-scale <i>Escherichia coli</i> models with proteome allocation, molecular crowding, and membrane capacity constraints reproduce these features in a multiphasic manner. In contrast to the original Monod's growth law, the global constraint principle also captures the dependence of microbial growth on the availability of multiple nutrients, by generalizing the Liebig's law of the minimum, another phenomenological growth law for higher organisms, into a terraced landscape of diminishing returns. It thus integrates the classical phenomenological laws proposed by Monod and Liebig into a comprehensive theory of cellular growth.

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Publication Details

Journal
Proceedings of the National Academy of Sciences
Published
2025-10-03
DOI
https://doi.org/10.1073/pnas.2515031122
Citations
2
Primary Topic
Microbial Metabolic Engineering and Bioproduction
Type
article
Field-Weighted Citation Impact
1.61
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article

Global constraint principle for microbial growth laws

Jumpei F. Yamagishi, Tetsuhiro Hatakeyama
2 citations
Proceedings of the National Academy of Sciences
Microbial Metabolic Engineering and Bioproduction
1.61
article

Global constraint principle for microbial growth laws

Jumpei F. Yamagishi, Tetsuhiro Hatakeyama
article en
2 citations

Abstract

Understanding complex living systems requires identifying universal phenomenological laws that are independent of species and molecular-biological details. The Monod equation is a cornerstone of phenomenological microbial growth laws, depicting the growth rate as a saturating function of a single substrate. Because of its similarity in functional form to the Michaelis-Menten equation, cellular growth is often thought to be limited by a single reaction. However, cellular growth generically results from the coordination of thousands of metabolic reactions and diverse intracellular limited resources. Consequently, the mechanistic origins of the Monod equation remain controversial, and its extension has encountered limitations. Here, we propose the global constraint principle for cellular growth: As one nutrient becomes more available, other intracellular resources become limiting, driving transitions to distinct modes of resource allocation. Based on a general framework of constraint-based modeling and its dual formulations, we mathematically prove that, in general, microbial growth kinetics curves are monotonically increasing and concave with respect to nutrient availability. Numerical simulations using genome-scale <i>Escherichia coli</i> models with proteome allocation, molecular crowding, and membrane capacity constraints reproduce these features in a multiphasic manner. In contrast to the original Monod's growth law, the global constraint principle also captures the dependence of microbial growth on the availability of multiple nutrients, by generalizing the Liebig's law of the minimum, another phenomenological growth law for higher organisms, into a terraced landscape of diminishing returns. It thus integrates the classical phenomenological laws proposed by Monod and Liebig into a comprehensive theory of cellular growth.

Proceedings of the National Academy of SciencesVol. 122(40)
Shanghai Institute for Science of Science (CN), Life Science Institute (JP), RIKEN Center for Biosystems Dynamics Research (JP), Institute for Future Engineering (JP), Earth-Life Science Institute (JP), Institute of Science Tokyo (JP), The University of Tokyo (JP)
Openalex Percentile: Top 14%
Microbial Metabolic Engineering and Bioproduction
1.61
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