CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy

CryoEMNet introduces a symmetry-aware deep learning framework for molecular reconstruction in cryo-electron microscopy (cryo-EM), achieving high-resolution and structurally consistent 3D reconstructions. By incorporating molecular symmetry constraints within deep learning-based reconstruction, CryoEMNet effectively mitigates challenges associated with noise, structural heterogeneity, and particle misalignment. The framework employs unsupervised learning and transfer learning techniques to refine molecular details and optimize particle orientations, resulting in improved reconstruction accuracy. Multi-trial evaluations demonstrate that CryoEMNet achieves an average resolution of 3.78 Å to 3.81 Å, consistently outperforming existing methods such as EMPIAR. This improvement enhances the interpretability of reconstructed density maps and facilitates more precise structural analysis. This advancement significantly improves the interpretability of the resulting density maps and enables more precise structural analyses. By harnessing symmetry-aware deep learning, CryoEMNet establishes a reliable and scalable methodology for cryo-EM reconstruction, further advancing progress in structural biology and biomedical research.

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Publication Details

Journal
Scientific Reports
Published
2025-10-03
DOI
https://doi.org/10.1038/s41598-025-18065-z
Primary Topic
Advanced Electron Microscopy Techniques and Applications
Type
article
Field-Weighted Citation Impact
0.00

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article

CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy

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Scientific Reports
Advanced Electron Microscopy Techniques and Applications
article

CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy

Shin‐Hung Pan, Wadee Alhalabi, Sudhakar Kumar, Brij B. Gupta, Bassma Saleh Alsulami, U.P.S. Chauhan, Sunil Kumar Singh, Kwok Tai Chui, Varsha Arya, Ching‐Hsien Hsu, Saksham Arora
article en

Abstract

CryoEMNet introduces a symmetry-aware deep learning framework for molecular reconstruction in cryo-electron microscopy (cryo-EM), achieving high-resolution and structurally consistent 3D reconstructions. By incorporating molecular symmetry constraints within deep learning-based reconstruction, CryoEMNet effectively mitigates challenges associated with noise, structural heterogeneity, and particle misalignment. The framework employs unsupervised learning and transfer learning techniques to refine molecular details and optimize particle orientations, resulting in improved reconstruction accuracy. Multi-trial evaluations demonstrate that CryoEMNet achieves an average resolution of 3.78 Å to 3.81 Å, consistently outperforming existing methods such as EMPIAR. This improvement enhances the interpretability of reconstructed density maps and facilitates more precise structural analysis. This advancement significantly improves the interpretability of the resulting density maps and enables more precise structural analyses. By harnessing symmetry-aware deep learning, CryoEMNet establishes a reliable and scalable methodology for cryo-EM reconstruction, further advancing progress in structural biology and biomedical research.

Scientific ReportsVol. 15(1)
Chandigarh University (IN), Chaoyang University of Technology (TW), Asia University (TW), China Medical University (TW), King Abdulaziz University (SA), Symbiosis International University (IN), Korea Soongsil Cyber ​​University (KR), China Medical University Hospital (TW), University of Warsaw (PL), University of Petroleum and Energy Studies (IN), Punjab Engineering College (IN)
King Abdulaziz University
Openalex Percentile: Top 88%
Advanced Electron Microscopy Techniques and Applications
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