CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy
CryoEMNet introduces a symmetry-aware deep learning framework for molecular reconstruction in cryo-electron microscopy (cryo-EM), achieving high-resolution and structurally consistent 3D reconstructions. By incorporating molecular symmetry constraints within deep learning-based reconstruction, CryoEMNet effectively mitigates challenges associated with noise, structural heterogeneity, and particle misalignment. The framework employs unsupervised learning and transfer learning techniques to refine molecular details and optimize particle orientations, resulting in improved reconstruction accuracy. Multi-trial evaluations demonstrate that CryoEMNet achieves an average resolution of 3.78 Å to 3.81 Å, consistently outperforming existing methods such as EMPIAR. This improvement enhances the interpretability of reconstructed density maps and facilitates more precise structural analysis. This advancement significantly improves the interpretability of the resulting density maps and enables more precise structural analyses. By harnessing symmetry-aware deep learning, CryoEMNet establishes a reliable and scalable methodology for cryo-EM reconstruction, further advancing progress in structural biology and biomedical research.
Authors
- Shin‐Hung Pan (ORCID: https://orcid.org/0000-0002-1366-539X)
- Wadee Alhalabi (ORCID: https://orcid.org/0000-0002-4505-7268)
- Sudhakar Kumar (ORCID: https://orcid.org/0000-0001-7928-4234)
- Brij B. Gupta (ORCID: https://orcid.org/0000-0003-4929-4698)
- Bassma Saleh Alsulami
- U.P.S. Chauhan (ORCID: https://orcid.org/0009-0009-7607-7745)
- Sunil Kumar Singh (ORCID: https://orcid.org/0000-0001-8954-6648)
- Kwok Tai Chui (ORCID: https://orcid.org/0000-0001-7992-9901)
- Varsha Arya (ORCID: https://orcid.org/0000-0001-7549-4429)
- Ching‐Hsien Hsu
- Saksham Arora
Institutions
- Chandigarh University (IN)
- Chaoyang University of Technology (TW)
- Asia University (TW)
- China Medical University (TW)
- King Abdulaziz University (SA)
- Symbiosis International University (IN)
- Korea Soongsil Cyber University (KR)
- China Medical University Hospital (TW)
- University of Warsaw (PL)
- University of Petroleum and Energy Studies (IN)
- Punjab Engineering College (IN)
Publication Details
- Journal
- Scientific Reports
- Published
- 2025-10-03
- DOI
- https://doi.org/10.1038/s41598-025-18065-z
- Primary Topic
- Advanced Electron Microscopy Techniques and Applications
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- King Abdulaziz University